Gene
| Gene Model ID | habu1_s4038_g13273 |
|---|---|
| Locus | habu1_scaffold4038 : 431806 ... 455048 : + |
| To GenomeBrowser | habu1_scaffold4038:431806..455048 |
| Genes list of scaffold | habu1_scaffold4038 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| hla class ii histocompatibility antigen gamma chain | GO:0002684 GO:0006886 GO:0006950 GO:0006955 GO:0008283 GO:0012505 GO:0019882 GO:0030217 GO:0042289 GO:0042613 GO:0043066 GO:0043231 GO:0044237 GO:0044238 GO:0044425 GO:0044444 GO:0048522 GO:0048584 GO:0051240 GO:0051249 GO:0070887 GO:0071704 GO:1902531 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4038_g13273.t2 | 1 | 1 | MHC2-interact | 12 | 94 | 8.7e-23 | 80.2 | 1.8e-26 | 1.3e-22 | 79.6 |
| habu1_s4038_g13273.t2 | 1 | 1 | MHCassoc_trimer | 106 | 170 | 2.3e-27 | 94.6 | 3.1e-31 | 2.3e-27 | 94.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4038_g13273.t2 | gi|327265494|ref|XP_003217543.1| | PREDICTED: HLA class II histocompatibility antigen gamma chain isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s4038_g13273.t2 | gi|641756895|ref|XP_008164690.1| | PREDICTED: HLA class II histocompatibility antigen gamma chain isoform X2 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 109.9 |
| Venom grand-1 | 42.1 |
| Pit, infrared sensing | 210.1 |
| Nose | 350.4 |
| Brain-1 | 72.0 |
| Eye | 83.9 |
| fetal fibroblast | 0.8 |
| venom gland-2 | 50.7 |
| Brain-2 | 55.9 |
| Spleen | 1177.6 |
| Lung | 738.1 |
| Liver | 98.2 |
| Kidney | 175.4 |
| Pancreas | 111.6 |
| Small intestine | 325.1 |
| Large intestine | 457.5 |
| Stomach | 299.5 |
| heart | 70.5 |
| ovary | 14.6 |
| cheek muscle | 29.2 |
Transcript
| Transcript ID | habu1_s4038_g13273.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13273.t1 actgtagaaataaacataaagcagatagagatactgttctccagtagtaggacttgcaaggagcagtaattgagagaagc agtagtaggagatgtagtaccacttgggaagagtgggaagcacttgaaaagcccagcaaacttttaaaaagttcccattt tccagtcatcaaacccactgccagaactctgcagaactgaggcaattaagaccatggaggatgaccatattcttctccca ccatctcaaccacaagcaagaagttcttgcagccgtgggactgcctacactgtcttttctctcctgggggccttgctcct cgctggccaggctgtgactgtctactttgtgtatcaacatgacaaccagatcaacaaactgaccaagaacacccagcaac tgaaactggactccctgattggcagcatctctaaaaatgtccagtcaggtccaaagatggcaatagctaatgtgatgcct ttggccctgaatgaaccagagtttttgcagatggaaaacaagctgactaacagcaccgaggatcaagtcaaacgtctgct cttgcgagaaaacccaaccagaacttttcctgaattaaaaagcaacttcctggaaaatatggggcaattgaagatccgca tggcttacaacgactggaaagagtttgaaacctggatgcacaagtggctgatcttccaaatggcccaaaaacaggataca gaagggaaaaccaagtgtcagaaggaagagtgtgttaagggtgtccatccaggaagattctgtgcccattgtgatgaaaa ggggaactatctgcctatgcagtgccttcccagcagtggctattgctggtgtgtctacaataatggcacaaagattgagg gctcttcaatccttggacgtccagactgtgatggaatagctggtcccactgaaccagtccgccctactcaccacagccct gaaacaaaaaccccccaaggaggcattttggatcctgagaatgtgacctattctggagatcaaaactgatggctctcttc agaaaatatgaaacaaggaggccagctcatcagcctaagaaagccaaattatcttcagcttgtttcacttttgctctgct tggatgttgtatttcctgaattacagtagtagcaaccgcttttagatttatcagtttaagaattatccttaaatggaaag gagggaagggtgaaaagtagcttaattattactgagtgcagtgctgagtggagaattattcttttagaaaagtgacttat gcttatccaagactttaacacacgagcaagaaatttagatgtttccctgtataatcatgttcccccccaccagattttaa cggttaaatcggttgagaagttcattc |
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| Transcript ID | habu1_s4038_g13273.t2 |
| Definition | - |
>habu1_s4038_g13273.t2 actgtagaaataaacataaagcagatagagatactgttctccagtagtaggacttgcaaggagcagtaattgagagaagc agtagtaggagatgtagtaccacttgggaagagtgggaagcacttgaaaagcccagcaaacttttaaaaagttcccattt tccagtcatcaaacccactgccagaactctgcagaactgaggcaattaagaccatggaggatgaccatattcttctccca ccatctcaaccacaagcaagaagttcttgcagccgtgggactgcctacactgtcttttctctcctgggggccttgctcct cgctggccaggctgtgactgtctactttgtgtatcaacatgacaaccagatcaacaaactgaccaagaacacccagcaac tgaaactggactccctgattggcagcatctctaaaaatgtccagtcaggtccaaagatggcaatagctaatgtgatgcct ttggccctgaatgaaccagagtttttgcagatggaaaacaagctgactaacagcaccgaggatcaagtcaaacgtctgct cttgcgagaaaacccaaccagaacttttcctgaattaaaaagcaacttcctggaaaatatggggcaattgaagatccgca tggcttacaacgactggaaagagtttgaaacctggatgcacaagtggctgatcttccaaatggcccaaaaacaggataca gaaggaatagctggtcccactgaaccagtccgccctactcaccacagccctgaaacaaaaaccccccaaggaggcatttt ggatcctgagaatgtgacctattctggagatcaaaactgatggctctcttcagaaaatatgaaacaaggaggccagctca tcagcctaagaaagccaaattatcttcagcttgtttcacttttgctctgcttggatgttgtatttcctgaattacagtag tagcaaccgcttttagatttatcagtttaagaattatccttaaatggaaaggagggaagggtgaaaagtagcttaattat tactgagtgcagtgctgagtggagaattattcttttagaaaagtgacttatgcttatccaagactttaacacacgagcaa gaaatttagatgtttccctgtataatcatgttcccccccaccagattttaacggttaaatcggttgagaagttcattc |
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Protein
| Protein ID | habu1_s4038_g13273.t1 |
|---|---|
| Definition | - |
>habu1_s4038_g13273.t1 MEDDHILLPPSQPQARSSCSRGTAYTVFSLLGALLLAGQAVTVYFVYQHDNQINKLTKNTQQLKLDSLIGSISKNVQSGP KMAIANVMPLALNEPEFLQMENKLTNSTEDQVKRLLLRENPTRTFPELKSNFLENMGQLKIRMAYNDWKEFETWMHKWLI FQMAQKQDTEGKTKCQKEECVKGVHPGRFCAHCDEKGNYLPMQCLPSSGYCWCVYNNGTKIEGSSILGRPDCDGIAGPTE PVRPTHHSPETKTPQGGILDPENVTYSGDQN |
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| Protein ID | habu1_s4038_g13273.t2 |
| Definition | - |
>habu1_s4038_g13273.t2 MEDDHILLPPSQPQARSSCSRGTAYTVFSLLGALLLAGQAVTVYFVYQHDNQINKLTKNTQQLKLDSLIGSISKNVQSGP KMAIANVMPLALNEPEFLQMENKLTNSTEDQVKRLLLRENPTRTFPELKSNFLENMGQLKIRMAYNDWKEFETWMHKWLI FQMAQKQDTEGIAGPTEPVRPTHHSPETKTPQGGILDPENVTYSGDQN |
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