Gene
| Gene Model ID | habu1_s4089_g13409 |
|---|---|
| Locus | habu1_scaffold4089 : 139446 ... 169390 : + |
| To GenomeBrowser | habu1_scaffold4089:139446..169390 |
| Genes list of scaffold | habu1_scaffold4089 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: coronin-1b | GO:0001725 GO:0005737 GO:0005884 GO:0005925 GO:0030027 GO:0031529 GO:0034316 GO:0035767 GO:0042060 GO:0042802 GO:0051015 GO:0051017 GO:0070062 GO:0071933 GO:0090135 GO:1902463 GO:2000394 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4089_g13409.t1 | 1 | 1 | DUF1899 | 5 | 69 | 1.1e-34 | 117.8 | 1.1e-37 | 2.0e-34 | 117.0 |
| habu1_s4089_g13409.t1 | 3 | 1 | WD40 | 77 | 110 | 6.1e-22 | 76.6 | 2.4e-12 | 4.4e-09 | 35.8 |
| habu1_s4089_g13409.t1 | 3 | 2 | WD40 | 123 | 161 | 6.1e-22 | 76.6 | 1.9e-09 | 3.6e-06 | 26.6 |
| habu1_s4089_g13409.t1 | 3 | 3 | WD40 | 175 | 204 | 6.1e-22 | 76.6 | 2.2e-07 | 0.0004 | 20.1 |
| habu1_s4089_g13409.t1 | 1 | 1 | DUF1900 | 259 | 392 | 0.0 | 185.3 | 0.0 | 0.0 | 184.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4089_g13409.t1 | gi|602636670|ref|XP_007425189.1| | PREDICTED: coronin-1B [Python bivittatus] | 0.0 |
| habu1_s4089_g13409.t1 | gi|327260542|ref|XP_003215093.1| | PREDICTED: coronin-1B [Anolis carolinensis] | 0.0 |
| habu1_s4089_g13409.t1 | gi|641754115|ref|XP_008176533.1| | PREDICTED: LOW QUALITY PROTEIN: coronin-1B [Chrysemys picta bellii] | 0.0 |
| habu1_s4089_g13409.t1 | gi|557322299|ref|XP_006034243.1| | PREDICTED: coronin-1B isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s4089_g13409.t1 | gi|564231498|ref|XP_006260143.1| | PREDICTED: coronin-1B isoform X2 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 24.5 |
| Venom grand-1 | 19.9 |
| Pit, infrared sensing | 24.8 |
| Nose | 22.9 |
| Brain-1 | 14.0 |
| Eye | 18.1 |
| fetal fibroblast | 41.8 |
| venom gland-2 | 22.2 |
| Brain-2 | 17.2 |
| Spleen | 31.6 |
| Lung | 39.9 |
| Liver | 19.9 |
| Kidney | 34.6 |
| Pancreas | 25.1 |
| Small intestine | 23.2 |
| Large intestine | 28.1 |
| Stomach | 23.3 |
| heart | 9.0 |
| ovary | 68.7 |
| cheek muscle | 7.9 |
Transcript
| Transcript ID | habu1_s4089_g13409.t1 |
|---|---|
| Definition | - |
>habu1_s4089_g13409.t1 cgccgcagccccttcctgtaccggaggaatttctcctccgagctttaggccgctcctcccgcaaagcaggtaaaaacggt gcttgggaagcaagcttcctccgcctcctcggtcatttcctgtaggcaccgagaggccggcccactccgggcctttcgtc cctcccttcgcatgcaccgccctgggctgtgcgcaagggagaggctgctccgttccgttcctccaagccgtcatgtcctt tcgtaaggttgtgcgtcagagcaaattccgccacgtctttggacagcctgtcaagaatgaccagtgctatgacgacatcc gggtttcacgagtcacctgggacagcaccttttgtgctgtcaacctcaagtttgtggcagtaattgtcgaggccagtgga gggggggcctttatggtgctcccgctgcaaaagacagggcgcattgataagtcttaccctaccgtgtgtgggcacactgg accagttttggacattgattggtgtccacataatgatcatatcattgccagtggttctgaggattgcactgttatggtat ggcagatcccagagggtggcctcacagtgcctctgaccgaaccagtggtggttctagaaggacactcgaaacgtgtgggc attatcacgtggcatccgaccgctcgcaacatccttctgagtgcaggctgtgataatgtggttattgtgtggaatgtggg cactgcagaagagctttactaccttgacaatctgcatcctgacatcatttataatgtcagctggaaccgggatggcagtc tgttctgttcagcttgtaaggacaaaagtgtgcgcatcattgatccacgtcgtgggcaagttgtagctgaaagggagaaa gcgcatgagggagcacgcccaatgcgagccattttcctggctgatgggaagatctttacaacaggcttcagccgtatgag tgaaaggcagctggctctctgggacccagaaaaccttgaagaacctatggcattgcaggaactagactcaagcaatggga cccttctgcccttctacgatcctgacaccaacgttatctacgtctgtggcaaaggagattctagcatccggtattttgag attacagcagaagcaccatacattcacttcctgaacacatttactagcaaagaaccacaacgtggcatgggttggatgcc caagcggggtctggatgtcaacaagtgtgagattgccagattttacaaactccatgagcgcaagtgtgaacccattatta tgacagtgccaaggaagtcagatctgttccaagatgacttgtacccagacacagctgggccggaagctgccatggaggca gaggaatgggtggcagggaagacagcaccccccatcctaatctcactgcgtgaagcctatgtacccaccaaacagcggga tttcaaggtcaaccgaagaagcttgttgcctgagggtcgcccggcggctccctccaacactgggctgagtgccacaccct ccagtgccatgactccatccgctgccacatctgcccttggtgtcactgctactagcggggaagggaggcagcttactgaa gaggtgttgcgtgaagtggcatccctgcgggcacttgtggctgcacagggggagcgcattgcacggctagagttgcagtt gagccgcattgagaatgactccaggcagctcagcagagagagaactgcatcgctttggatgatgaaactgaggctccccc acattctcttattgctgcttcctgggcaaatccaggcagagattctagagagtggcaggagtgacagtgggaatgtcaca gtgagtatcctcatctgcctgttgtttgtgctgctgctgctgctgtttatagcatggtactggttgaaccgtgcaacgga aggaaggtaccaccctcggcacctgatgggaaacctggttttttggtggcaacagttctggagggagacactttctgaag ccttggctgaggattaccaggatgagaaacagagcgatggggagcttgaggaagagcaacaacagcatgtggagaatgga gaagaaggaggagaagaggaggagacagaggaggaggaggaggaggagaagcagcagcagcagctccttcaggaggaaga agagaagctgactaaggaagcctatcaagaggcagcagtggaggaggccttggaagaaggtgaagcatcaaaggcagccc agagcagcgcagaaattctactgagtcatctgcattccttctctggaacagcatcctgggaagatagtggcaaaccactg aatgtcactgctctctagaaatcccagggaggagggaaggatggacctgtcacaaacaagcttgtcatgcttggtatcag acccacatatgggaaacccaagactgctgtcactctgctttgtgtactgcttccactggggagcagcactgtttgtaagg ttgcatttgcttcttctaacctgttccaaaaagcttgttgtcaaacaaaaaaaaaaaaggcatattccctgtaacaataa aacagagaactggtggctgtatc |
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Protein
| Protein ID | habu1_s4089_g13409.t1 |
|---|---|
| Definition | - |
>habu1_s4089_g13409.t1 MSFRKVVRQSKFRHVFGQPVKNDQCYDDIRVSRVTWDSTFCAVNLKFVAVIVEASGGGAFMVLPLQKTGRIDKSYPTVCG HTGPVLDIDWCPHNDHIIASGSEDCTVMVWQIPEGGLTVPLTEPVVVLEGHSKRVGIITWHPTARNILLSAGCDNVVIVW NVGTAEELYYLDNLHPDIIYNVSWNRDGSLFCSACKDKSVRIIDPRRGQVVAEREKAHEGARPMRAIFLADGKIFTTGFS RMSERQLALWDPENLEEPMALQELDSSNGTLLPFYDPDTNVIYVCGKGDSSIRYFEITAEAPYIHFLNTFTSKEPQRGMG WMPKRGLDVNKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAAMEAEEWVAGKTAPPILISLREAYVPTK QRDFKVNRRSLLPEGRPAAPSNTGLSATPSSAMTPSAATSALGVTATSGEGRQLTEEVLREVASLRALVAAQGERIARLE LQLSRIENDSRQLSRERTASLWMMKLRLPHILLLLLPGQIQAEILESGRSDSGNVTVSILICLLFVLLLLLFIAWYWLNR ATEGRYHPRHLMGNLVFWWQQFWRETLSEALAEDYQDEKQSDGELEEEQQQHVENGEEGGEEEETEEEEEEEKQQQQLLQ EEEEKLTKEAYQEAAVEEALEEGEASKAAQSSAEILLSHLHSFSGTASWEDSGKPLNVTAL |
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