Gene
| Gene Model ID | habu1_s4089_g13416 |
|---|---|
| Locus | habu1_scaffold4089 : 337356 ... 359790 : + |
| To GenomeBrowser | habu1_scaffold4089:337356..359790 |
| Genes list of scaffold | habu1_scaffold4089 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cardiotrophin-like cytokine factor 1 isoform x1 | GO:0005125 GO:0005127 GO:0007166 GO:0030183 GO:0030890 GO:0042517 GO:0043524 GO:0046982 GO:0048295 GO:0048711 GO:0070062 GO:0097058 GO:0097059 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4089_g13416.t1 | 1 | 1 | PRF | 87 | 237 | 2.0e-07 | 30.4 | 3.4e-11 | 2.5e-07 | 30.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4089_g13416.t1 | gi|602636692|ref|XP_007425199.1| | PREDICTED: cardiotrophin-like cytokine factor 1 [Python bivittatus] | 0.0 |
| habu1_s4089_g13416.t1 | gi|637248675|ref|XP_008109651.1| | PREDICTED: cardiotrophin-like cytokine factor 1 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s4089_g13416.t1 | gi|637248670|ref|XP_008109647.1| | PREDICTED: cardiotrophin-like cytokine factor 1 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s4089_g13416.t1 | gi|641754103|ref|XP_008176502.1| | PREDICTED: cardiotrophin-like cytokine factor 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s4089_g13416.t1 | gi|557322281|ref|XP_006034235.1| | PREDICTED: cardiotrophin-like cytokine factor 1 isoform X2 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.1 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 2.0 |
| Nose | 1.1 |
| Brain-1 | 0.2 |
| Eye | 0.9 |
| fetal fibroblast | 19.0 |
| venom gland-2 | 0.4 |
| Brain-2 | 0.2 |
| Spleen | 0.3 |
| Lung | 1.1 |
| Liver | 0.2 |
| Kidney | 0.5 |
| Pancreas | 0.6 |
| Small intestine | 0.4 |
| Large intestine | 1.5 |
| Stomach | 0.9 |
| heart | 0.3 |
| ovary | 0.2 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s4089_g13416.t1 |
|---|---|
| Definition | - |
>habu1_s4089_g13416.t1 aaccggtcgtaagtcgaggactacccaaccggtcgtaagtcgaggactttccctgcccgggagcgccgcgcatgcgtggt tccgccccctgcgccggccgaggcgtagctggcaagcagcagagacggagcaggccgaccaccagctggcccagctcaag ggagctccttacaagtgtgctccctgcaggagattcgtgggggatccttgccttcctgtgtgccacgctttggaacctgc ctggggtgcctgcactgaaccgcacggaccaagtgaccaccagacagtccatccagcagatgtacgaccttactcgctat ctggaacaccaactgcacacgcttgcggccatttatctcaactacctggggccacctttcaatgagccggactttgatcc tccccggataattggggtagaagctgtgccaagtgccaccgtagacattcaggagtggcacagcttgaatgacaatgccc ggctagcagctaattaccaggcctacagccacctgctctgctacctgaggaccatggatggcacggctccaactgccttg ccgagtctgcgccacagcctagcccactttagggctagcctgcaagggctgctgggctcgatcgcaggcatcatggcttc cctgggttattcacttccaactccagggccccctctagagctgaccccacccagccacttcctgcgcaagatggatgact tctggctgctcaaagagctacagacctggctgtggcgctcagccaaagacttcaaccgactgcgtaaaagggtgcctccg tccgctgttatgctgcatctggaaaccagaggcttttgattcctgccgtcaccattgtctctgccttcacctcattcact gacaccattcagacctgccactcaaggactagcacttctgaaagactccaaatccactgccttctcccagcccctcctca aaattgccctcctcctcttcttcctcccttgcttttttggtgctgcattgttctctgctactaagttgggctctgggtga gcagatacacatctatacagcctgtttctttgcatctcttcctcctccaccttgtataaaattaatatatcctctttctc tt |
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Protein
| Protein ID | habu1_s4089_g13416.t1 |
|---|---|
| Definition | - |
>habu1_s4089_g13416.t1 MRGSAPCAGRGVAGKQQRRSRPTTSWPSSRELLTSVLPAGDSWGILAFLCATLWNLPGVPALNRTDQVTTRQSIQQMYDL TRYLEHQLHTLAAIYLNYLGPPFNEPDFDPPRIIGVEAVPSATVDIQEWHSLNDNARLAANYQAYSHLLCYLRTMDGTAP TALPSLRHSLAHFRASLQGLLGSIAGIMASLGYSLPTPGPPLELTPPSHFLRKMDDFWLLKELQTWLWRSAKDFNRLRKR VPPSAVMLHLETRGF |
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