Gene
| Gene Model ID | habu1_s4166_g13606 |
|---|---|
| Locus | habu1_scaffold4166 : 349012 ... 400265 : - |
| To GenomeBrowser | habu1_scaffold4166:349012..400265 |
| Genes list of scaffold | habu1_scaffold4166 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| fanconi anemia group c protein isoform x1 | GO:0002262 GO:0005829 GO:0006289 GO:0007281 GO:0019430 GO:0043240 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4166_g13606.t2 | 1 | 1 | Fanconi_C | 35 | 584 | 0.0 | 680.2 | 0.0 | 0.0 | 680.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4166_g13606.t2 | gi|558221332|ref|XP_006135957.1| | PREDICTED: Fanconi anemia group C protein isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.7 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.7 |
| Nose | 0.7 |
| Brain-1 | 0.1 |
| Eye | 0.1 |
| fetal fibroblast | 1.3 |
| venom gland-2 | 0.3 |
| Brain-2 | 0.1 |
| Spleen | 0.5 |
| Lung | 0.3 |
| Liver | 0.3 |
| Kidney | 0.1 |
| Pancreas | 0.1 |
| Small intestine | 0.6 |
| Large intestine | 0.2 |
| Stomach | 0.3 |
| heart | 0.2 |
| ovary | 25.8 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s4166_g13606.t1 |
|---|---|
| Definition | - |
>habu1_s4166_g13606.t1 tgaggactaaacaggtcgtaagtcgaggactaaaccagtcgtacgttgaggactacccaactggtcgtaagtcgaggact ttccctgcctgggagcgccgcgcatgcgtggttccgcccccctgtgccggccgaggcgtagctggcaagcggcagagacc gagcaggccaaccaccagctggcccagcccaagggagatgacagaatggttgaagatagtggagtctctaactcaagcat tgagttttggctgaacaagactcttgagtgggatcagatcaccactttagaatctcagcaagatgtctgccttcacttgc ctgaattacaggaatttctcctgcagatttatggagctttgaaacatatgaactcgacaactgcagtccaaaaatttcca ttaattggtcagttattgggaagactctgttggaatccttttgtcattggatatgatgaatgccagaagattctgatgtg ctgcttatgttgtctgtacagtggtgaaccacagaaccctctggaattgaaggccaacagctggatacaaaactcattgt gccatctgctgtcgttttgtggactgggaaatcatggtactgatattaataagtttatttcaactcttggcttcacctca gtagattactactctaaagtcattgaaaatatagtctcatcgttagtgatggaactcagcagaacccaagttaatggatt taacggtcaacaaaccatgtcttgtcgagtaacatccatgtctcttctctgtgtacctcttataactctacctgatataa aaccacttattgaagctctccttaactatcgtgatcatggaccacaagaagtgcttcactctcagtttttagaagcagtg aatgaggctatactacggaaaaatatctccttatctgaaactgctgttctgcaactatggcttcgtcaccttcctagtct agagaaggcaatactacgaaatattgaacagttaatatccagtcaatcaaggtcaatggaagagatggcatgtgtgataa aagattctttattgcatcaagctgcatgtcatccagctgtcttcagaactattgatgaaattttcaagaatgccctgctg gaaactgctggagctcaagaaataatgattgtaatgcaggtgtttacacagtgctttgttcaagcttaccatgagaataa taagcagcataaatttccactgaaggcctattttcctcataatccacagtcacttgtgatagctttccttaaagctcctt cagatttgcctggtaatagtctatatcagcatttagaccaccttgctggaatgctcaaaacaacagtagaagtcaagggc tctgagtctttggatgaagccttcaacaactggcttttgttgattcactttggagaatgggctgatcttgcagcaaagca gttgctgttgtcacaagcagagtcctctaacttgttgtggcttttggtattttactatactccaaacaacgtgaatcagc agagaactcaaataatggtagaagctagatctgtatgtgactatctgacaagcctctcaaggatgccaaccatttctgtt gcaaacctacaaactttattcagcagcaaaaccagtgtaaatcattctgcagctaaacatattgttatgcatctgattat cagctttgtgctatttactcctaacggacacaccgtagccagggaattgattacatacattctagctagaggtggtgaaa tcccagaagtaaccggacttcttacccgtatctcaaatacagctagccaacttggagtgaaatatcagtgctctgtaaag ctagcaaatgatctgctccaggaatttcgatgtggtgcttagtatttattcagaattatggaatagaaggagagaaagta gctgttttccaatgggcattttctgaaagatattggaagataaaactgttatttacaaactgtata |
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| Transcript ID | habu1_s4166_g13606.t2 |
| Definition | - |
>habu1_s4166_g13606.t2 tgaggactaaacaggtcgtaagtcgaggactaaaccagtcgtacgttgaggactacccaactggtcgtaagtcgaggact ttccctgcctgggagcgccgcgcatgcgtggttccgcccccctgtgccggccgaggcgtagctggcaagcggcagagacc gagcaggccaaccaccagctggcccagcccaagggagatgacagaatggttgaagatagtggagtctctaactcaagcat tgagttttggctgaacaagactcttgagtgggatcagatcaccactttagaatctcagcaagatgtctgccttcacttgc ctgaattacaggaatttctcctgcagatttatggagctttgaaacatatgaactcgacaactgcagtccaaaaatttcca ttaattggtcagttattgggaagactctgttggaatccttttgtcattggatatgatgaatgccagaagattctgatgtg ctgcttatgttgtctgtacagtggtgaaccacagaaccctctggaattgaaggccaacagctggatacaagtttccacaa gcaaaatcactggaaaaaccagtagggaatatcacaagttgctgtgaactcattgtgccatctgcttagattactactct aaagtcattgaaaatatagtctcatcgttagtgatggaactcagcagaacccaagttaatggatttaacggtcaacaaac catgtcttgtcgagtaacatccatgtctcttctctgtgtacctcttataactctacctgatataaaaccacttattgaag ctctccttaactatcgtgatcatggaccacaagaagtgcttcactctcagtttttagaagcagtgaatgaggctatacta cggaaaaatatctccttatctgaaactgctgttctgcaactatggcttcgtcaccttcctagtctagagaaggcaatact acgaaatattgaacagttaatatccagtcaatcaaggtcaatggaagagatggcatgtgtgataaaagattctttattgc atcaagctgcatgtcatccagctgtcttcagaactattgatgaaattttcaagaatgccctgctggaaactgctggagct caagaaataatgattgtaatgcaggtgtttacacagtgctttgttcaagcttaccatgagaataataagcagcataaatt tccactgaaggcctattttcctcataatccacagtcacttgtgatagctttccttaaagctccttcagatttgcctggta atagtctatatcagcatttagaccaccttgctggaatgctcaaaacaacagtagaagtcaagggctctgagtctttggat gaagccttcaacaactggcttttgttgattcactttggagaatgggctgatcttgcagcaaagcagttgctgttgtcaca agcagagtcctctaacttgttgtggcttttggtattttactatactccaaacaacgtgaatcagcagagaactcaaataa tggtagaagctagatctgtatgtgactatctgacaagcctctcaaggatgccaaccatttctgttgcaaacctacaaact ttattcagcagcaaaaccagtgtaaatcattctgcagctaaacatattgttatgcatctgattatcagctttgtgctatt tactcctaacggacacaccgtagccagggaattgattacatacattctagctagaggtggtgaaatcccagaagtaaccg gacttcttacccgtatctcaaatacagctagccaacttggagtgaaatatcagtgctctgtaaagctagcaaatgatctg ctccaggaatttcgatgtggtgcttagtatttattcagaattatggaatagaaggagagaaagtagctgttttccaatgg gcattttctgaaagatattggaagataaaactgttatttacaaactgtata |
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Protein
| Protein ID | habu1_s4166_g13606.t1 |
|---|---|
| Definition | - |
>habu1_s4166_g13606.t1 MRGSAPLCRPRRSWQAAETEQANHQLAQPKGDDRMVEDSGVSNSSIEFWLNKTLEWDQITTLESQQDVCLHLPELQEFLL QIYGALKHMNSTTAVQKFPLIGQLLGRLCWNPFVIGYDECQKILMCCLCCLYSGEPQNPLELKANSWIQNSLCHLLSFCG LGNHGTDINKFISTLGFTSVDYYSKVIENIVSSLVMELSRTQVNGFNGQQTMSCRVTSMSLLCVPLITLPDIKPLIEALL NYRDHGPQEVLHSQFLEAVNEAILRKNISLSETAVLQLWLRHLPSLEKAILRNIEQLISSQSRSMEEMACVIKDSLLHQA ACHPAVFRTIDEIFKNALLETAGAQEIMIVMQVFTQCFVQAYHENNKQHKFPLKAYFPHNPQSLVIAFLKAPSDLPGNSL YQHLDHLAGMLKTTVEVKGSESLDEAFNNWLLLIHFGEWADLAAKQLLLSQAESSNLLWLLVFYYTPNNVNQQRTQIMVE ARSVCDYLTSLSRMPTISVANLQTLFSSKTSVNHSAAKHIVMHLIISFVLFTPNGHTVARELITYILARGGEIPEVTGLL TRISNTASQLGVKYQCSVKLANDLLQEFRCGA |
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| Protein ID | habu1_s4166_g13606.t2 |
| Definition | - |
>habu1_s4166_g13606.t2 MRGSAPLCRPRRSWQAAETEQANHQLAQPKGDDRMVEDSGVSNSSIEFWLNKTLEWDQITTLESQQDVCLHLPELQEFLL QIYGALKHMNSTTAVQKFPLIGQLLGRLCWNPFVIGYDECQKILMCCLCCLYSGEPQNPLELKANSWIQVSTSKITGKTS REYHKLLXTHCAICLDYYSKVIENIVSSLVMELSRTQVNGFNGQQTMSCRVTSMSLLCVPLITLPDIKPLIEALLNYRDH GPQEVLHSQFLEAVNEAILRKNISLSETAVLQLWLRHLPSLEKAILRNIEQLISSQSRSMEEMACVIKDSLLHQAACHPA VFRTIDEIFKNALLETAGAQEIMIVMQVFTQCFVQAYHENNKQHKFPLKAYFPHNPQSLVIAFLKAPSDLPGNSLYQHLD HLAGMLKTTVEVKGSESLDEAFNNWLLLIHFGEWADLAAKQLLLSQAESSNLLWLLVFYYTPNNVNQQRTQIMVEARSVC DYLTSLSRMPTISVANLQTLFSSKTSVNHSAAKHIVMHLIISFVLFTPNGHTVARELITYILARGGEIPEVTGLLTRISN TASQLGVKYQCSVKLANDLLQEFRCGA |
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