Gene
| Gene Model ID | habu1_s4166_g13607 |
|---|---|
| Locus | habu1_scaffold4166 : 416123 ... 484865 : - |
| To GenomeBrowser | habu1_scaffold4166:416123..484865 |
| Genes list of scaffold | habu1_scaffold4166 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein patched homolog 1 | GO:0000122 GO:0001658 GO:0001843 GO:0003007 GO:0005113 GO:0005119 GO:0005794 GO:0005901 GO:0007346 GO:0007420 GO:0008158 GO:0008201 GO:0008544 GO:0008589 GO:0010157 GO:0010875 GO:0015485 GO:0016021 GO:0016485 GO:0021522 GO:0021997 GO:0030326 GO:0030332 GO:0030496 GO:0032403 GO:0032880 GO:0035137 GO:0040015 GO:0042593 GO:0043433 GO:0043616 GO:0045668 GO:0048471 GO:0048568 GO:0050680 GO:0051782 GO:0060037 GO:0060831 GO:0061005 GO:0061053 GO:0071397 GO:0072203 GO:0072372 GO:0072661 GO:0097108 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4166_g13607.t1 | 1 | 1 | Sterol-sensing | 143 | 282 | 1.3e-35 | 122.0 | 1.8e-39 | 1.3e-35 | 122.0 |
| habu1_s4166_g13607.t1 | 2 | 1 | Patched | 149 | 531 | 0.0 | 218.3 | 4.2e-36 | 3.1e-32 | 111.4 |
| habu1_s4166_g13607.t1 | 2 | 2 | Patched | 644 | 844 | 0.0 | 218.3 | 2.6e-35 | 1.9e-31 | 108.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4166_g13607.t1 | gi|602643622|ref|XP_007428269.1| | PREDICTED: protein patched homolog 1 [Python bivittatus] | 0.0 |
| habu1_s4166_g13607.t1 | gi|637261232|ref|XP_008101424.1| | PREDICTED: LOW QUALITY PROTEIN: protein patched homolog 1 [Anolis carolinensis] | 0.0 |
| habu1_s4166_g13607.t1 | gi|530634885|ref|XP_005304344.1| | PREDICTED: protein patched homolog 1 isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s4166_g13607.t1 | gi|530634883|ref|XP_005304343.1| | PREDICTED: protein patched homolog 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s4166_g13607.t1 | gi|591362368|ref|XP_007056093.1| | PREDICTED: protein patched homolog 1 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.3 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 1.5 |
| Nose | 0.2 |
| Brain-1 | 3.1 |
| Eye | 0.7 |
| fetal fibroblast | 0.7 |
| venom gland-2 | 0.0 |
| Brain-2 | 3.3 |
| Spleen | 0.3 |
| Lung | 0.3 |
| Liver | 0.1 |
| Kidney | 0.7 |
| Pancreas | 0.7 |
| Small intestine | 1.0 |
| Large intestine | 0.7 |
| Stomach | 0.7 |
| heart | 0.7 |
| ovary | 0.5 |
| cheek muscle | 1.4 |
Transcript
| Transcript ID | habu1_s4166_g13607.t1 |
|---|---|
| Definition | - |
>habu1_s4166_g13607.t1 ggcattaaaaaggttgagaaccactggactaaacccttagtgactcttgttttcttttgttttgtggaaggaattataga gatctaaagcttatgaaagattatagaacacctttacccttgtttaattatcacaccactggactgcttctgggagggcg caaagttacagtctgggactgcatatctacccctcttgatgtcgcccttgctttaaacggtggatgctatgggctgtcaa aaaaatacatgcattggcaagaagaactgattattggtggcactgttaaaaatggtactggggggaaacttgtcagtgct caggctttacagaccatgtttcagctaatgactccaaagcaaatgtatgaacacttcaagggttacgactacgtttcgca catcaactggaatgaggacaaggcagctgcgatcctggaagcatggcagaggatgtatgttgaggttgctcatcaaagtc ttgcacaaaactctactcagaaggtgctttcctttacaacgacgacgctggaggacatcctaaagtcattttctgacgtc agcgtcatcagagttgctagtggctatctattaatggttttaccctttcttgctcttggagttggggtagatgatgtctt tcttttggcacatgcatttagtgaaactgggcagaataagagaattccatttgaggatagaacaggggaatgtctgaaac gcacgggtgcaagtgtggcccttacatctattagcaacgttactgcatttttcatggctgccttaattcccattccagct ctccgggcattttcactccaagctgctgtggttgtagtatttaactttgccatggttctgttaatttttcctgctatttt gagtatggacctataccgccgggaagatcggaggctggatatattctgctgttttacaagcccctgtgtcagcagagtca ttcagattgaacctcaagcatatgcagaggccggcgataacttccgctacagccctccaccgccctacagcagccccagt tttgcccacgaaactcaaatcacaatgcagtctacagtccagctgcgcactgaatacgacccacacactcaggtttatta taccacagcagaacctcggtccgaaatatcggtccaaccagtcaccgtgccacaagatgacctcagctgccagagcccgg aaagcaccagttcaactagggatcttctttctcagttctccgaaactacattgcattgtcttgagccaccctgtactaaa tggacactctcctcttttgctgaaaagcagtatgcgccactcctgttaaaaccaaaagcaaagattatggtcatttttct ttttctgggtttacttggccttagtctttacggaacgactcgtgtgaaagatggattggatctcacagacattgtgccac gggagactcgggagtatgagttcattgcagcccagttcaaatacttctcattctaccatatgtatattgttacccagaaa gcggattatcccaacatccaacatttactttatgaacttcacagaagcttcagcaatgtgacctatgttttattggaaga aaataagcaactccctaaaatgtggttgcattattttagagactggctgcaaggtctccaggaggcttttgacaaagact ggaaatctgggcagatcacccttcacggttacaaaaatggatctgaagatgctgttttggcttacaaacttctagttcag actatttcaaacatccgagagaaaccccttaacgtgagccagttggctaaacagcgcttagtggatgcagatggaatcat taacccaaaggcattctacatgtatctaacagcctgggttagcaacgatcctgtggcatacgctgcctctcaagccaaca tacggccccatcgtccagaatgggttcatgataaagcagactatatgccagtaaccatcccagaagctgagccaattgaa tatgctcagtttcctttctacctcaatggactgcgcgatacctctgattttgtggaagctatagagaaagtgagagcaat ctgcaataattacactagccttgggattcccagttacccaaacgggtatccctttctcttttgggaacaatatataagcc ttcgtcattggctcctcttatccattagcgtggttctggcctgcacatttctggtgtgtgccctcattcttctgaacccc tggacagctgggatcattgtggttgtactggctcttatgacagtggaactctttggcatgatgggtctaattggaataaa actaagtgcagttcctgtcgtcatcctgattgcatctgttggaattggagtggaattcacggttcatattgctttggcat ttctaacagcaataggagacaaaaatcataggactatccttgcgttagaacacatgtttgcacccgtgttggatggagct gtgtctacactacttggcgtattaatgcttgcgggatctgaatttgactttattgtcaggtatttctttgctgttttggc aattttaactatcttgggcgctttgaatggattggtgctgcttcctgttctcctttccctatttggaccatatcctgagg tttctccagctgatggaaggagaagactacctaccccttcttctgaacctcccccaagcattgtgaggtttgctgttcca ccgactcatggtcaaaatggctcagatacatctgattctgaatacagttctcagacaacagtatcaggaatcagtgagga actacatcaatatgagggcccccagagaactggggccccagtccatcaagtcattgttgaagcaactgaaaatccggtgt ttgccaaatccacggtgatccaaccagaatcaagctattatccatcaagcccaaagctacagtctaaccaagaccctgga atccaacaaccatggcataagagcaagaagttgaaaagagaaccaagggaaagacttcaaccacccccttaccggccacg tagagatgcctttgaaacttttactaaagggcattcctgttctagtaacagggattgctctggtcagagaacccgttctc agaacatcagaaatccagccttcaccgccacaggctcttctgtgccatcatgctgccagcctatcactaccgtgactgcc tcagcttcagttactgtagctgtacatcctgctgggcacagccacaatcctcatggaggaagctttccagcctatgagag acaccatgaagctgagcatggacaatttgaggatcctcatgttccatttaatgtccggtgtgagaggaggaactctaaaa tagaaatcatagaactgcaagatgttgaatgtgaagaaagggctcatggcgagggctcggattaagggaaataactgaag caaagaaagaggccaaagatgggagacctcgtctttccagaaacgcttgaagagaaactacttcgagttgcggggaaaaa aggacaatgctgcaccaggacaaatattcccctttactgtaatctattgtaaaattttgtgaattatttctataaatatt taaaagatgtacacatct |
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Protein
| Protein ID | habu1_s4166_g13607.t1 |
|---|---|
| Definition | - |
>habu1_s4166_g13607.t1 MKDYRTPLPLFNYHTTGLLLGGRKVTVWDCISTPLDVALALNGGCYGLSKKYMHWQEELIIGGTVKNGTGGKLVSAQALQ TMFQLMTPKQMYEHFKGYDYVSHINWNEDKAAAILEAWQRMYVEVAHQSLAQNSTQKVLSFTTTTLEDILKSFSDVSVIR VASGYLLMVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAF SLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQIEPQAYAEAGDNFRYSPPPPYSSPSFAHE TQITMQSTVQLRTEYDPHTQVYYTTAEPRSEISVQPVTVPQDDLSCQSPESTSSTRDLLSQFSETTLHCLEPPCTKWTLS SFAEKQYAPLLLKPKAKIMVIFLFLGLLGLSLYGTTRVKDGLDLTDIVPRETREYEFIAAQFKYFSFYHMYIVTQKADYP NIQHLLYELHRSFSNVTYVLLEENKQLPKMWLHYFRDWLQGLQEAFDKDWKSGQITLHGYKNGSEDAVLAYKLLVQTISN IREKPLNVSQLAKQRLVDADGIINPKAFYMYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPVTIPEAEPIEYAQF PFYLNGLRDTSDFVEAIEKVRAICNNYTSLGIPSYPNGYPFLFWEQYISLRHWLLLSISVVLACTFLVCALILLNPWTAG IIVVVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHIALAFLTAIGDKNHRTILALEHMFAPVLDGAVSTL LGVLMLAGSEFDFIVRYFFAVLAILTILGALNGLVLLPVLLSLFGPYPEVSPADGRRRLPTPSSEPPPSIVRFAVPPTHG QNGSDTSDSEYSSQTTVSGISEELHQYEGPQRTGAPVHQVIVEATENPVFAKSTVIQPESSYYPSSPKLQSNQDPGIQQP WHKSKKLKREPRERLQPPPYRPRRDAFETFTKGHSCSSNRDCSGQRTRSQNIRNPAFTATGSSVPSCCQPITTVTASASV TVAVHPAGHSHNPHGGSFPAYERHHEAEHGQFEDPHVPFNVRCERRNSKIEIIELQDVECEERAHGEGSD |
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