Gene
| Gene Model ID | habu1_s4223_g13688 |
|---|---|
| Locus | habu1_scaffold4223 : 62262 ... 80845 : - |
| To GenomeBrowser | habu1_scaffold4223:62262..80845 |
| Genes list of scaffold | habu1_scaffold4223 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 6 isoform x1 | GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4223_g13688.t1 | 1 | 1 | RRM_6 | 148 | 223 | 2.1e-10 | 40.4 | 3.8e-13 | 9.4e-10 | 38.3 |
| habu1_s4223_g13688.t1 | 1 | 1 | G-patch_2 | 525 | 578 | 4.0e-08 | 32.9 | 1.6e-10 | 3.9e-07 | 29.8 |
| habu1_s4223_g13688.t1 | 1 | 1 | G-patch | 533 | 575 | 1.2e-17 | 63.3 | 1.0e-20 | 2.5e-17 | 62.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4223_g13688.t1 | gi|602634351|ref|XP_007424048.1| | PREDICTED: RNA-binding protein 6 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s4223_g13688.t1 | gi|602634353|ref|XP_007424049.1| | PREDICTED: RNA-binding protein 6 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s4223_g13688.t1 | gi|327265725|ref|XP_003217658.1| | PREDICTED: RNA-binding protein 6 [Anolis carolinensis] | 0.0 |
| habu1_s4223_g13688.t1 | gi|564253182|ref|XP_006265597.1| | PREDICTED: RNA-binding protein 6 isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s4223_g13688.t1 | gi|557284425|ref|XP_006025051.1| | PREDICTED: RNA-binding protein 6 isoform X1 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.8 |
| Venom grand-1 | 8.4 |
| Pit, infrared sensing | 7.8 |
| Nose | 6.5 |
| Brain-1 | 5.2 |
| Eye | 6.0 |
| fetal fibroblast | 6.6 |
| venom gland-2 | 7.8 |
| Brain-2 | 5.6 |
| Spleen | 9.9 |
| Lung | 9.6 |
| Liver | 6.6 |
| Kidney | 6.6 |
| Pancreas | 9.6 |
| Small intestine | 10.1 |
| Large intestine | 10.3 |
| Stomach | 10.7 |
| heart | 6.3 |
| ovary | 6.4 |
| cheek muscle | 7.4 |
Transcript
| Transcript ID | habu1_s4223_g13688.t1 |
|---|---|
| Definition | - |
>habu1_s4223_g13688.t1 aagatagttttgaatttggctatatgtatttttttagtcagaatatctatttgagtagaaggcagttacaatagaccact tataaattatgaaaacgtaataaaatttacaagaatggctagtagctgtcaagatgctggactacaactccttttttgat attggccatggtggctggagctgattttagagtttaacagtgtattaatgactatgcctgtactctggtttaataaaata atagtcaataaattaataaatttaacctgtagaatcattttaatagttcttgtggagtaataggaagggacatcttatga ttggtggtaaacaagtcacacttgaatatagtccataccctgagttttggtattgcaagcgttgtaaagcgcgcacagta gggtttcattcagaagggtatcgttcatcttgttacttctgtaaactcccaagagatgtaacagaagaaaaacttgaaaa gggggaggaagagtcccctgaggaaccaagcccaaagggggaatctgttgaagaccctgctccaccccaagagctgccat ctcagaagccagattctgagctgcaatgcccgcctcaagaatttgaacccaagaagaaggataaaaacagagaagagtgg ctcacacaagaaaagaagagggaccctgaaatgtatccaccccggaaagaaaaccaagagcgtagttcaaggagagacac tggggaaaataagcgtcaggaggatgagagtaaaacaattatgttaaaacgcattcctcgcttcactccaccggaagtga ttgtaggacttttagcaccatatgtccgtctctctacttcaagtgtgcgagtaatgaagaacaaagctggtcggatgggc tacacctatggtttcattgaactcgactctcatgctgaggcacgccagttagtgaaagtattacaagacctagatccacc aattagcattgatggccgtgctgtggatgtaaacctagctacaggaaagaggagaaatgaatatggagaccaaggtgata tttctcgtttcaaccagggcaaacgaggcatgaatgacaggagaggcactgacatacagaaacgaaaatcagagtcttct tctgatgtgtctacattcatttatgatccagatactggaaattattttgatcccataagtggagtgtattatgatccgaa tactcagagagaaataccaataggtcgggaagcatcaccaccaccaccatctagtatgaggcattataaaagccaagaaa ggacaagtgaaagagatgagacatccagtagagataatagagacagaagagaaagacacagaagtaaatcagccaagaat gagcatcaagaggacagatttcctgcagaaggtgtctttaaaaagccactacctccaatattgaaaaaagaagaaagcac tcctccaccaaaggtggtgaatcctctgatagggcttttgggggaatatggtggggatagtgacaatgaggaagaagagg aggaggagccgcagccacagccatcacgaccagtagtccagcaagaggagcggccccaaaaggttgaaagcgatgaagat aagctgacagactggaataaattagcatgtttactttgccggaggcagtttccaaataaagaggttctgattaaacatca acaactatccaaccttcacaaacaaaacttagagattcactggaaaataaaacgatcagagcaagaactggcatatttgg agaagcgagagcgagagggaaaatttaaagaaaagggaaatgaccgaagagagagatttgaggaacgagaatctccagag agaaaacggccaaaatccttcagaaattctgacagtgagtataagcccacagataaaggaagaatggagagcaataacaa aggaagccgaatgatgcaagctatgggctggaaagaaggttcagggctaggacgcaatgaacaaggcatgacatcaccag tagaggcagaaaatcggaagaagggagcaggcttaggaacccaaggaaggcccagtagaaggcaatctaatgaaacctat cgagatgcagtgcggagagtcatgtttgcccgttacaaggaacttgaataaatgtggaaagaaatcataccatacatctt gtatcttccagccccttctttgtgttctttttgtaattattttcttttttgctgctgaagtgtgttttgttttttgtttt tgaaataaaaccgaaaaaaaaaaacatttct |
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Protein
| Protein ID | habu1_s4223_g13688.t1 |
|---|---|
| Definition | - |
>habu1_s4223_g13688.t1 MIGGKQVTLEYSPYPEFWYCKRCKARTVGFHSEGYRSSCYFCKLPRDVTEEKLEKGEEESPEEPSPKGESVEDPAPPQEL PSQKPDSELQCPPQEFEPKKKDKNREEWLTQEKKRDPEMYPPRKENQERSSRRDTGENKRQEDESKTIMLKRIPRFTPPE VIVGLLAPYVRLSTSSVRVMKNKAGRMGYTYGFIELDSHAEARQLVKVLQDLDPPISIDGRAVDVNLATGKRRNEYGDQG DISRFNQGKRGMNDRRGTDIQKRKSESSSDVSTFIYDPDTGNYFDPISGVYYDPNTQREIPIGREASPPPPSSMRHYKSQ ERTSERDETSSRDNRDRRERHRSKSAKNEHQEDRFPAEGVFKKPLPPILKKEESTPPPKVVNPLIGLLGEYGGDSDNEEE EEEEPQPQPSRPVVQQEERPQKVESDEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSNLHKQNLEIHWKIKRSEQELAY LEKREREGKFKEKGNDRRERFEERESPERKRPKSFRNSDSEYKPTDKGRMESNNKGSRMMQAMGWKEGSGLGRNEQGMTS PVEAENRKKGAGLGTQGRPSRRQSNETYRDAVRRVMFARYKELE |
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