Gene
| Gene Model ID | habu1_s4419_g14186 |
|---|---|
| Locus | habu1_scaffold4419 : 7115 ... 55785 : - |
| To GenomeBrowser | habu1_scaffold4419:7115..55785 |
| Genes list of scaffold | habu1_scaffold4419 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable global transcription activator snf2l2 isoform x1 | GO:0006355 GO:0016817 GO:0044699 GO:0048523 GO:0090544 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4419_g14186.t1 | 1 | 1 | QLQ | 103 | 138 | 1.3e-15 | 56.4 | 4.5e-19 | 1.3e-15 | 56.4 |
| habu1_s4419_g14186.t1 | 1 | 1 | HSA | 327 | 398 | 4.2e-18 | 64.9 | 4.3e-21 | 1.3e-17 | 63.3 |
| habu1_s4419_g14186.t1 | 1 | 1 | BRK | 422 | 467 | 3.6e-18 | 64.7 | 2.2e-21 | 6.5e-18 | 63.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4419_g14186.t1 | gi|470610711|ref|XP_004315337.1| | PREDICTED: LOW QUALITY PROTEIN: probable global transcription activator SNF2L2-like [Tursiops truncatus] | 0.0 |
| habu1_s4419_g14186.t1 | gi|564231858|ref|XP_006260317.1| | PREDICTED: probable global transcription activator SNF2L2 isoform X2 [Alligator mississippiensis] | 0.0 |
| habu1_s4419_g14186.t1 | gi|557279299|ref|XP_006022689.1| | PREDICTED: probable global transcription activator SNF2L2-like [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.7 |
| Venom grand-1 | 5.3 |
| Pit, infrared sensing | 5.2 |
| Nose | 5.4 |
| Brain-1 | 7.7 |
| Eye | 8.6 |
| fetal fibroblast | 17.5 |
| venom gland-2 | 7.6 |
| Brain-2 | 8.0 |
| Spleen | 8.0 |
| Lung | 4.9 |
| Liver | 5.1 |
| Kidney | 6.8 |
| Pancreas | 5.0 |
| Small intestine | 5.8 |
| Large intestine | 6.8 |
| Stomach | 5.0 |
| heart | 7.8 |
| ovary | 13.8 |
| cheek muscle | 17.9 |
Transcript
| Transcript ID | habu1_s4419_g14186.t1 |
|---|---|
| Definition | - |
>habu1_s4419_g14186.t1 agcccaggacctgggccatcaccaagctcagtacatagcatgatgggaccaagtcctggacctccaagtgttccacatcc aataccatctatgggaccgggtgattattcacaggaaggcatgcaccaaatgcacaaacctattgatggtttgcacgaaa aagggatggttgaagacctacataacagttccatgaaggctgcaaacatgcgacctcctcttcctggcatgggaccacct cagagtccaatggatcaacacagtcaaggttatatgtctccgcatccctctcccctgggagcacctgagcacgtgtctag tccaatgtctggaggaggtccaactccaccccagatgcaaccaagtcagccaggacccatgatgcctgcagagcaacaag tgatgagccaacccagtagaggcccttcacctttcagtcctgttcagttgcatcagctccgagctcagattttagcatac aaaatgctggctagaggacagccaatccctgaaaacattcagctcgctgtacaagggaaaaggtcactgcccgggattca gcagcaacagactctttacagagcatgcgggcaaggagtggatatgaatgcctcaagtacaccccaaaaactggctgtgc cacctccaagtggaaggccgtcacctgcccctgctgctacccagcctgcagctgtaatgccaggtccttctgtaccgcag cctgcagctggtcagccttcacctattgttcagctgcagcaaaaacagaatcgtatcagccccatccaaaagcctcaggg gctggatcctgttgaaattcttcaggaacgggaatataggcttcaggctcgaattgcacacagaattcaggaattagaaa atttgcctggttctttacctccagatctgaggactaaagccacggtggagctgaaagcgcttaggctactgaatttccaa cgccagctgcgacaagaagtagtggcgtgcatgcgtcgtgacacaactttggagactgctctgaactctaaggcatacaa acgcagcaagcggcagaccctgagggaagcccgaatgactgagaaacttgagaaacaacagaaaatagagcaggagagaa aacgtagacagaagcaccaggaatatctcaatagcattttacaacatgctaaagattttaaagaataccatcggtcagtg gctggaaaaattcagaagctttccaaagctgtggctacttggcatgccaacacggaacgcgaacagaagaaagaaacaga gaggattgagaaagaacgaatgagacggctgatgaaggtagaagacaacacggagggaataggatctggacttggtcctg atggagaactcatagatgagagcagtcagatgagtgatctcccggtcaaggtaactcatacagaaacaggcaaagttctc cttggaccagaagctcctaaagcaagtcaattggatgcttggttagaaatgaacccaggctatgaagttgctcccagatc agacagtgaagaggaaagtggatcagaatatgaagaagatgaagatgatgatgaatcaagtagacaagaaacagatgaaa agagacatctggatcccaacagtgaagatgtttccgaaagagccgctaaagaaatcattgagacagccagacaagatgtg gatgatgaatacagcatgcagtacagtgccagaggatctcagtcttactatacagtggctcatgcaattgctgagagggt ggaaaagcagtcctctctccttatcaacggcaccctgaaacattaccaggcaagcactggaaattgctcctacaggaact tcatgccagggatccttaaactgtaccgtagttagtctcctaaaaataaaaagctggactatttcagattta |
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Protein
| Protein ID | habu1_s4419_g14186.t1 |
|---|---|
| Definition | - |
>habu1_s4419_g14186.t1 MHQMHKPIDGLHEKGMVEDLHNSSMKAANMRPPLPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMQ PSQPGPMMPAEQQVMSQPSRGPSPFSPVQLHQLRAQILAYKMLARGQPIPENIQLAVQGKRSLPGIQQQQTLYRACGQGV DMNASSTPQKLAVPPPSGRPSPAPAATQPAAVMPGPSVPQPAAGQPSPIVQLQQKQNRISPIQKPQGLDPVEILQEREYR LQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMT EKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMKV EDNTEGIGSGLGPDGELIDESSQMSDLPVKVTHTETGKVLLGPEAPKASQLDAWLEMNPGYEVAPRSDSEEESGSEYEED EDDDESSRQETDEKRHLDPNSEDVSERAAKEIIETARQDVDDEYSMQYSARGSQSYYTVAHAIAERVEKQSSLLINGTLK HYQASTGNCSYRNFMPGILKLYRS |
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