Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s4419_g14189
Locus habu1_scaffold4419 : 338385 ... 348095 : -
To GenomeBrowser habu1_scaffold4419:338385..348095
Genes list of scaffold habu1_scaffold4419

Annotation by Blast2GO
Annotation GO
doublesex- and mab-3-related transcription factor 2 GO:0003700 GO:0005634 GO:0005667 GO:0006355 GO:0014807 GO:0042803 GO:0043565 GO:0045449 GO:0048706 GO:2000287

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s4419_g14189.t3 1 1 DM 109 155 8.0e-23 79.7 4.8e-26 1.4e-22 78.8

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 8.1
Venom grand-1 1.2
Pit, infrared sensing 0.9
Nose 7.4
Brain-1 0.7
Eye 1.6
fetal fibroblast 5.3
venom gland-2 0.4
Brain-2 0.4
Spleen 3.0
Lung 1.4
Liver 6.1
Kidney 11.1
Pancreas 8.1
Small intestine 0.1
Large intestine 31.2
Stomach 3.2
heart 0.0
ovary 13.6
cheek muscle 0.4

Transcript
Transcript IDhabu1_s4419_g14189.t1
Definition-
>habu1_s4419_g14189.t1
cttactccttgaaggcgcactaaaccttcttgggcaataaaagcggaggtgagcaggacagaagcgtgggctttacccaa
ccccgctatatcttctgaacgttatctgcctacaattcccgtcgctgtcctaatttgggatggaagaagcgagctggagg
agaaggcgggagccgcgcggcgcgagccatggctgaggggcagcaggtgggccccgtcgccgccgacgcctgggagatcg
acgtggagagcctggaagagccggatcagctcgagcggccgtcgccggcggcgccccgcgcgccctcgctacagtccgcc
ggagacgacgaggaggaagacgacaaccaggacgacgacgacgacgagggcgaagaagacgaaggcgacgccggggcagc
gggcgaccttctccggctgcctgggctgccgcagccgcagcttgtctcgccgtcgccggcggcggaggagagaggcgtag
gcggcggggagcagccggtccgcaagcttagccgcacacccaagtgcgcgcgctgccgcaaccacggcgtggtgtcctgc
ctgaaaggccacaagcgcttctgccggtggcgggactgccagtgtgccaactgcctgctggtggtggagcggcagcgcgt
catggccgcccaggtggcgcttcgcaggcagcaggccaccgaggacaagaagggacatacagggaaacaggctaattttg
agcgcagaacagtgtaccagagacatgttcggacacctagtttgctggctaaaagcattttagaaggttatcgtcccatt
ccagcagaaccttacctaggagggaattcgtccttgccacctcccgttagtgacagaatgagaaaaagacgggcttttgc
tgacaaagaacttgagaacataatgcttgagcgggaatacaaggaacgagaaatgatggaagccacccaggcggctgcct
tcttcctgccaaaccgcatggtacatgggcccgagtacaattcatacaagagttttaaccctcatcaacttgaagcttcc
agtaaggagttttgcggttttctgcctacctgcttagatctgactatgcagtattcaggctcggggaacatggaactgat
ctcatcaaatctgagtgtggccaccacctaccggcagtatcctttaccctccagattcttggtgtggccgaagtgtggcc
ctcttagtgatgcccttctctatcagcaatgccttctaaatgctaccacagtccagtctctcaaacctggagtagtttgg
gacaataaggcttcacatggccaggattttcccacctctgaacacgagatcacagtgtcaaaaaatgagaacaccttcca
ccatcctcatgttcaagaacgcgagacacctcaaagtgagctccaaaacatctctcgggaggctcctgagagatcagcgt
tttcatctcccaagaggacctttccacagatctctggcaaggatcctatagttcatcgggacccgtctctcagcaagatg
ggcaaagaaagcaacaagcagcatctgctactgccgccttcatctaaacataatcctttccattcattattccagcagac
gcttcagagcaaagcgggatcagagttaaaaaccacttttgatgaggcatccaagaaatacagagagtgtaccttcagag
aaaacccaaaatacaaattcagcatcgacagatatgcaaaagactttcgggagactaaacaagttgtgacaaaattatcc
acaaatgaaccgttacctttttctgttgaatcaattcttaaatgaccatcttcagtggtcaccagtgtttctcaataggc
cgacagtgggatcttcaaaacaaatatattggcacttagaattgaacttaaccacatgggccaagaagcaagtccctttg
aatttattagagatttcttctaggtgctttatccaaaatacacttgaaataagttcttcagattttattgaaaccgattt
ccaataaacaggttttgaactccaacacagcactagtatcagtcgatttcagagcagatgagttgccctttttgggggga
attgactattccaaaactttaacaattattgatatgctgtctgataagcgcatgtccactgccttttgccatcatatttt
ttgaaaaaagaatttcagatgtaaagggggataataaaaatgtacataatatgcatgtttttatatgaaaataaaatatt
taaatgttttgcaaatt
Transcript IDhabu1_s4419_g14189.t2
Definition-
>habu1_s4419_g14189.t2
ctcgagaggaatcgccccgatccaggactccaggggacgtggctggagacgtggcgaggctttgggcgggctgaagcgac
ttcgcctgtagccgtgtctcggcgcgctccgccttcgccgggaccgaatgcccttattgcgcgcctctgcagccccctcg
gacgcttggttgtggaagaagcgagctggaggagaaggcgggagccgcgcggcgcgagccatggctgaggggcagcaggt
gggccccgtcgccgccgacgcctgggagatcgacgtggagagcctggaagagccggatcagctcgagcggccgtcgccgg
cggcgccccgcgcgccctcgctacagtccgccggagacgacgaggaggaagacgacaaccaggacgacgacgacgacgag
ggcgaagaagacgaaggcgacgccggggcagcgggcgaccttctccggctgcctgggctgccgcagccgcagcttgtctc
gccgtcgccggcggcggaggagagaggcgtaggcggcggggagcagccggtccgcaagcttagccgcacacccaagtgcg
cgcgctgccgcaaccacggcgtggtgtcctgcctgaaaggccacaagcgcttctgccggtggcgggactgccagtgtgcc
aactgcctgctggtggtggagcggcagcgcgtcatggccgcccaggtggcgcttcgcaggcagcaggccaccgaggacaa
gaagggacatacagggaaacaggctaattttgagcgcagaacagtgtaccagagacatgttcggacacctagtttgctgg
ctaaaagcattttagaagtactgcttggatttttttctttacctctatctacctttagagaataggaatgcaccagttgt
aggtatagagatctttcaaaattatattataagtgtcataataaagaaatgttaatgtagtaaaatg
Transcript IDhabu1_s4419_g14189.t3
Definition-
>habu1_s4419_g14189.t3
cttactccttgaaggcgcactaaaccttcttgggcaataaaagcggaggtgagcaggacagaagcgtgggctttacccaa
ccccgctatatcttctgaacgttatctgcctacaattcccgtcgctgtcctaatttgggatggaagaagcgagctggagg
agaaggcgggagccgcgcggcgcgagccatggctgaggggcagcaggtgggccccgtcgccgccgacgcctgggagatcg
acgtggagagcctggaagagccggatcagctcgagcggccgtcgccggcggcgccccgcgcgccctcgctacagtccgcc
ggagacgacgaggaggaagacgacaaccaggacgacgacgacgacgagggcgaagaagacgaaggcgacgccggggcagc
gggcgaccttctccggctgcctgggctgccgcagccgcagcttgtctcgccgtcgccggcggcggaggagagaggcgtag
gcggcggggagcagccggtccgcaagcttagccgcacacccaagtgcgcgcgctgccgcaaccacggcgtggtgtcctgc
ctgaaaggccacaagcgcttctgccggtggcgggactgccagtgtgccaactgcctgctggtggtggagcggcagcgcgt
catggccgcccaggtggcgcttcgcaggcagcaggccaccgaggacaagaagggacatacagggaaacaggctaattttg
agcgcagaacagtgtaccagagacatgttcggacacctagtttgctggctaaaagcattttagaagtactgcttggattt
ttttctttacctctatctacctttagagaataggaatgcaccagttgtaggtatagagatctttcaaaattatattataa
gtgtcataataaagaaatgttaatgtagtaaaatg

Protein
Protein IDhabu1_s4419_g14189.t1
Definition-
>habu1_s4419_g14189.t1
MAEGQQVGPVAADAWEIDVESLEEPDQLERPSPAAPRAPSLQSAGDDEEEDDNQDDDDDEGEEDEGDAGAAGDLLRLPGL
PQPQLVSPSPAAEERGVGGGEQPVRKLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRR
QQATEDKKGHTGKQANFERRTVYQRHVRTPSLLAKSILEGYRPIPAEPYLGGNSSLPPPVSDRMRKRRAFADKELENIML
EREYKEREMMEATQAAAFFLPNRMVHGPEYNSYKSFNPHQLEASSKEFCGFLPTCLDLTMQYSGSGNMELISSNLSVATT
YRQYPLPSRFLVWPKCGPLSDALLYQQCLLNATTVQSLKPGVVWDNKASHGQDFPTSEHEITVSKNENTFHHPHVQERET
PQSELQNISREAPERSAFSSPKRTFPQISGKDPIVHRDPSLSKMGKESNKQHLLLPPSSKHNPFHSLFQQTLQSKAGSEL
KTTFDEASKKYRECTFRENPKYKFSIDRYAKDFRETKQVVTKLSTNEPLPFSVESILK
Protein IDhabu1_s4419_g14189.t2
Definition-
>habu1_s4419_g14189.t2
MPLLRASAAPSDAWLWKKRAGGEGGSRAARAMAEGQQVGPVAADAWEIDVESLEEPDQLERPSPAAPRAPSLQSAGDDEE
EDDNQDDDDDEGEEDEGDAGAAGDLLRLPGLPQPQLVSPSPAAEERGVGGGEQPVRKLSRTPKCARCRNHGVVSCLKGHK
RFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGHTGKQANFERRTVYQRHVRTPSLLAKSILEVLLGFFSLPL
STFRE
Protein IDhabu1_s4419_g14189.t3
Definition-
>habu1_s4419_g14189.t3
MAEGQQVGPVAADAWEIDVESLEEPDQLERPSPAAPRAPSLQSAGDDEEEDDNQDDDDDEGEEDEGDAGAAGDLLRLPGL
PQPQLVSPSPAAEERGVGGGEQPVRKLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRR
QQATEDKKGHTGKQANFERRTVYQRHVRTPSLLAKSILEVLLGFFSLPLSTFRE

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Okinawa Institute of Science and Technology
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