Gene
| Gene Model ID | habu1_s4419_g14197 |
|---|---|
| Locus | habu1_scaffold4419 : 735713 ... 761679 : + |
| To GenomeBrowser | habu1_scaffold4419:735713..761679 |
| Genes list of scaffold | habu1_scaffold4419 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4419_g14197.t2 | 1 | 1 | cobW | 39 | 226 | 1.4013e-45 | 155.6 | 0.0 | 1.4013e-45 | 155.1 |
| habu1_s4419_g14197.t2 | 1 | 1 | GTP_EFTU | 158 | 219 | 7.6e-06 | 25.4 | 1.8e-06 | 0.0021 | 17.5 |
| habu1_s4419_g14197.t2 | 1 | 1 | CobW_C | 273 | 369 | 4.6e-14 | 51.9 | 7.0e-17 | 8.0e-14 | 51.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4419_g14197.t2 | gi|557279268|ref|XP_006022675.1| | PREDICTED: COBW domain-containing protein 1 isoform X1 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.2 |
| Venom grand-1 | 8.6 |
| Pit, infrared sensing | 5.9 |
| Nose | 7.6 |
| Brain-1 | 5.4 |
| Eye | 5.3 |
| fetal fibroblast | 19.9 |
| venom gland-2 | 11.1 |
| Brain-2 | 4.4 |
| Spleen | 5.8 |
| Lung | 5.3 |
| Liver | 7.7 |
| Kidney | 6.8 |
| Pancreas | 6.4 |
| Small intestine | 8.6 |
| Large intestine | 6.7 |
| Stomach | 5.7 |
| heart | 8.0 |
| ovary | 23.9 |
| cheek muscle | 8.5 |
Transcript
| Transcript ID | habu1_s4419_g14197.t1 |
|---|---|
| Definition | - |
>habu1_s4419_g14197.t1 cttaggataggaacttgtcagaagagaggaggagttacaacagcgggaaccaaaggcccggcgtttgacaggtgagagat ggaaagttcatttatggatgatgaagaggattgccctgaattgattcccataagggagccagcaataaaggataatgtag aagacgttcaatctagcaacaattttaagattcctgttactataatctcaggatatttaggtgctggaaaaactactctt cttaattatattttgactgaacaacatagcaagagaatagcagttattttaaatgaatttggtgaaggcagtgcgttgga aaaatccttggctataagtcaaggtggagaactctatgaagaatggctggagctcagaaatggctgcctttgctgttcag taaaagacaatggtttgaaagcaattgaaaatttgatgcagaagaaagggaagtttgattacattttgctagagacaaca ggattggcagatccaggttctgtggcctccatgttttgggtggacgctgaattaggaagtgacatttatcttgatggtat tatatctgttgttgatgcaaagcatgggctacagcaccttaaagaagaaaagcccacaggccttattaatgaagctgcta ggcaaattgccctagcagatcttatcatcatcaataaggtagacttggtttcacaagctgaactgatgaaattaagaaca gctgttagtgcaataaatggagttgccaagattttagaaactcagcgctcaagagttgagatctctaatgtgttagacct gcatgcttttgacagtgtatcaggaaaaagtttgcagcagaaacttcagcttgaagaagaacctcatccacatctagata agagtattgttacatccacttttgaagtgctaggaaatacaactgaagaagacctaaatgtgtttattcaaaatctgttg tgggagaaaaatgtaaaagacaagaaagggattggtgtccatcaaagataaatctcatcaggtgatagttcagggtgttt atgagctctacgatctagaggaaacaactgtgaaatggaaagaggatgaacgaattaatcgaatagtcttaataggaagg aacctggataatgatatccttaaagacctcttcatagcaactgtgaccaaaagagggggaaatagttgacgccagaaaag tgttttttagcccttcatttttaccagtggattattaaaatatcctggacctgtttttcttttttttaatagtggagctt tataaaactgttgctcacatatagaatattaagcctgaatttatccagaatgaggaattaattttgaataaagtaaatat gtgtatgtccttga |
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| Transcript ID | habu1_s4419_g14197.t2 |
| Definition | - |
>habu1_s4419_g14197.t2 cttaggataggaacttgtcagaagagaggaggagttacaacagcgggaaccaaaggcccggcgtttgacaggtgagagat ggaaagttcatttatggatgatgaagaggattgccctgaattgattcccataagggagccagcaataaaggataatgtag aagacgttcaatctagcaacaattttaagattcctgttactataatctcaggatatttaggtgctggaaaaactactctt cttaattatattttgactgaacaacatagcaagagaatagcagttattttaaatgaatttggtgaaggcagtgcgttgga aaaatccttggctataagtcaaggtggagaactctatgaagaatggctggagctcagaaatggctgcctttgctgttcag taaaagacaatggtttgaaagcaattgaaaatttgatgcagaagaaagggaagtttgattacattttgctagagacaaca ggattggcagatccaggttctgtggcctccatgttttgggtggacgctgaattaggaagtgacatttatcttgatggtat tatatctgttgttgatgcaaagcatgggctacagcaccttaaagaagaaaagcccacaggccttattaatgaagctgcta ggcaaattgccctagcagatcttatcatcatcaataaggtagacttggtttcacaagctgaactgatgaaattaagaaca gctgttagtgcaataaatggagttgccaagattttagaaactcagcgctcaagagttgagatctctaatgtgttagacct gcatgcttttgacagtgtatcaggaaaaagtttgcagcagaaacttcagcttgaagaagaacctcatccacatctagata agagtattgttacatccacttttgaagtgctaggaaatacaactgaagaagacctaaatgtgtttattcaaaatctgttg tgggagaaaaatgtaaaagacaagaaaggtaaccccatggaagtaataagactaaagggattggtgtccatcaaagataa atctcatcaggtgatagttcagggtgtttatgagctctacgatctagaggaaacaactgtgaaatggaaagaggatgaac gaattaatcgaatagtcttaataggaaggaacctggataatgatatccttaaagacctcttcatagcaactgtgaccaaa agagggggaaatagttgacgccagaaaagtgttttttagcccttcatttttaccagtggattattaaaatatcctggacc tgtttttcttttttttaatagtggagctttataaaactgttgctcacatatagaatattaagcctgaatttatccagaat gaggaattaattttgaataaagtaaatatgtgtatgtccttga |
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Protein
| Protein ID | habu1_s4419_g14197.t1 |
|---|---|
| Definition | - |
>habu1_s4419_g14197.t1 MESSFMDDEEDCPELIPIREPAIKDNVEDVQSSNNFKIPVTIISGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSAL EKSLAISQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKFDYILLETTGLADPGSVASMFWVDAELGSDIYLDG IISVVDAKHGLQHLKEEKPTGLINEAARQIALADLIIINKVDLVSQAELMKLRTAVSAINGVAKILETQRSRVEISNVLD LHAFDSVSGKSLQQKLQLEEEPHPHLDKSIVTSTFEVLGNTTEEDLNVFIQNLLWEKNVKDKKGIGVHQR |
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| Protein ID | habu1_s4419_g14197.t2 |
| Definition | - |
>habu1_s4419_g14197.t2 MESSFMDDEEDCPELIPIREPAIKDNVEDVQSSNNFKIPVTIISGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSAL EKSLAISQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKFDYILLETTGLADPGSVASMFWVDAELGSDIYLDG IISVVDAKHGLQHLKEEKPTGLINEAARQIALADLIIINKVDLVSQAELMKLRTAVSAINGVAKILETQRSRVEISNVLD LHAFDSVSGKSLQQKLQLEEEPHPHLDKSIVTSTFEVLGNTTEEDLNVFIQNLLWEKNVKDKKGNPMEVIRLKGLVSIKD KSHQVIVQGVYELYDLEETTVKWKEDERINRIVLIGRNLDNDILKDLFIATVTKRGGNS |
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