Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s4508_g14341
Locus habu1_scaffold4508 : 154306 ... 192592 : +
To GenomeBrowser habu1_scaffold4508:154306..192592
Genes list of scaffold habu1_scaffold4508

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s4508_g14341.t2 5 1 HEAT_2 519 577 2.3e-26 91.8 3.5e-06 0.0087 16.3
habu1_s4508_g14341.t2 1 1 HEAT 520 547 1.7e-14 52.5 5.3e-07 0.0013 18.6
habu1_s4508_g14341.t2 5 2 HEAT_2 591 679 2.3e-26 91.8 4.2e-06 0.01 16.0
habu1_s4508_g14341.t2 5 3 HEAT_2 624 697 2.3e-26 91.8 1.6e-07 0.0004 20.6
habu1_s4508_g14341.t2 5 4 HEAT_2 690 778 2.3e-26 91.8 8.1e-12 2.0e-08 34.3
habu1_s4508_g14341.t2 1 1 HEAT_EZ 734 780 4.1e-09 36.6 4.0e-06 0.0099 16.3
habu1_s4508_g14341.t2 5 5 HEAT_2 757 844 2.3e-26 91.8 9.6e-11 2.4e-07 30.9

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.7
Venom grand-1 0.1
Pit, infrared sensing 0.6
Nose 1.7
Brain-1 0.1
Eye 0.1
fetal fibroblast 0.0
venom gland-2 0.0
Brain-2 0.2
Spleen 0.0
Lung 0.8
Liver 0.0
Kidney 0.2
Pancreas 0.0
Small intestine 0.0
Large intestine 0.1
Stomach 0.0
heart 0.1
ovary 0.1
cheek muscle 0.1

Transcript
Transcript IDhabu1_s4508_g14341.t1
Definition-
>habu1_s4508_g14341.t1
caaaatctatatggaagaaagatactcaagacatttgaaaactatttattttaaatatagttcacctttgatacacaatt
ggaattcttttctaatggccataataaaactccttagctgagatttcatgtccctggaaatatattttccagtgtcttcc
cttgctagccaagagaggccagtcagggttttgctgactatttcttttaagagaaattgcctaatgaaagatttgatatc
aaatggccagatctagagagagctatatttaaaatcaacaaatcaaaatggtcagtatgcaaatgcatctgtgtaactag
gcaactacagtaaacagtcagatccaatgtcttttgaaaacttgtaatgccccagcaagttggagttttgaaataatctg
taaggaaaacctgaacagtctcagcagaagaatggaatgaggcaatttgttttttgaaatgtttgattaaaaaaaacaca
cataccgttacctagtcagaagtcttaccattcttgataggatggaggtttctaatgttttcaagagccaaacccccttt
ccttctgagtctactttaaaagtcaaagttgacaggaagaacttgccatcttaccaagctatgttgtctgcaatgagggc
aaaaatgccttttatgtatcagagagatgtcagccatgttgagtcgcattatgcacactatcagaaacaatgtcttaaga
atgtatccaagagcattcatttttccaaagaaactattaaaccatcagctttatcttataaagattatgaccctaaaggt
ctatatgatttttccagtgtcattcgtccatgtaaagatgaagacattatttctaaaaagccaaggcaaccaagaaagct
gaaaccatcaagaagattacctcggttgagggaaccagaaattgctcatgtccaagaaactactgggaatctccctctgt
tcttagaagactgtatctgggaagccaaagtagaaagtacccaagcagagcccacattgctggtacccattcctcctcct
cctcctctttctcctcctccttctgaccttccaaatatccaggcattccagaccaaacctcttgagaagttagaagactc
aagtaggaaaagacagtccaaatacacaatctgggatgaaccagaagaagaaaaactggggtgggaagaaagactgttaa
caaagataagcaaaacaacagctcaatggattgtgaacaatcaaacctcttgggggggttgggttcagagtaagctaaaa
catttcaagaaacaaaaatatgactggaacagcatcagatatgtactcccttgtgaaaatgatgtggaattactggacga
aattctagcagaggaaacaatggaaggaggtcctgttcccagagatgaacaaaagaaactagagacacctctctctgctt
actatcgattgccatcttttcatgcaagagtgctgtacgaggatgatctactttttcaaaatcaaacagcagaaaaaata
tcaatgaaatgtctcagaccagcgactcctattaaacggcatgaacggctgcaccctaggactgggaaatattcatatat
gacccagaatgtctttgaacaagaactttattttgggtcagccaagattatccaccaaaaaatcaagaaggatcgtatca
ttctggataatcatgatgaatataacaaacatctagaacaatgctacccaagacctcccgaaatctggagcttcaggcca
ccaaaagggacaactaaaaaagtacagaagggaatgatccactggaaaacacttcccactcttattgaagatttttccca
agtggatgaaatacaatcacctgactcaactggaagagaaagagatctgtggcctaaacaggaagaaaacttatctgaga
ctgttcgcatctgtaagacaatgttggaacaatggaaagctgcctggaaatttgatcctcattggcagacagcaactata
gaaggaatacttgcagaccttgctgatctgcatgttcaaaatcggatcaatggtttacttgtctgtgcatctgctgtgct
tgagcgtccctgtaaagtcccaaatacaagtcaggagtcagtaataggactagatactttcacgaagggcatagagattg
aggatataccgaaaaaaatacagcctttgctgcaaaaaactctgtttgatacggatgcacatgtacgaatggcagctgca
gtatgcttctatgccatgtggaaaccaaatccagaggcacagtctattatgaagaatgctctgatacatggtaattctgc
agacagctgggcagcagctcaagctctagcactggaaggaattgccagtttccaggtagtgaaaaggattctgtctcaga
tttttgatcaaaacgatgatgcctcagaagaacaggcatgtcttttgttagctcggctcagcaaacacacgggtttggtt
cattgtttactggcatcagaattgaacagctatcaatggatacatcgggttttggcatgtaaaacattgtctcgtattcc
agggagcgtcacccaggacctcaagaacaaaattgtccaactgatgtggacagattggaaaattgaggtacgccaggcag
ctgccaaggttttgggacatttgaaacttggaaaagaagtccatgatcagctgagagacaatctaaaaaggggagattgc
cggaagaaagtggaagctctttcgttgattggctggctgaaattcatgacagccaggctgctccctggctttcttcagtg
tttctctgatgattttgtagctgtcagaaaagaagcttgctgggcagccggagcacttcagattaaagaagagacagtac
tgaaatgccttttcaagatcatgcagaccgatcctttatggaaaatcaaagctcttgccatcagagctttgggtcagata
ggtgaggcaagtccttacctaaaagaccttcttctctgggcccttcattatgaagaagatcctggagtacggagggaagc
ctgccggagtatcatcactctcaaaatgcaggatgaaactgttcgggctactttactgatgagaatgatactggaaccaa
atgagaaagtgaaagaagaagtgagtcgtgctgtgacaaatttcaaatttgaacaagaggaagagcaagaaatgatccaa
aaaatcaagaatgagatttccagattaagccaaacacccctagtgataaagaaagtactaaaacttcaagaagtaataga
aaagatgtggcatgaagcccactgcatttatcgggaaaagggagacatctttgcatatagagatattcgtgacatcttcc
ttgatgttgttaaaactgctttcactgatcaaacacaaacaccaagcaggaagttttcaaacctttggattactatcata
aatgtactactggatcacaaacgcttcaatatcatcataatgaggggcaaagccttgagttccagcaggagtcagccttg
gttaggaatccctccaaatccctggacacgaagagccttttatgaggcactaaaaagacacaaggcagaaagggaaaaac
atctcaagaaatcaaaaacaactacagaaaagcataaagaatccgaggacatcgaaaagggcaaaacaaaaatatctgct
gtccattttgaatcataacaggttacttggctgaccctttcactgcggaagatgcagcagaatgcagtggtgtaactctg
ctatgctgaaaaactcagtctgatggaatgctataagctcagtttgttacagaaaagtgttataagtattggagaatgtt
agatgagtttaaagcagttatgttctgtatttgtaaatgcagatttcctcttaattttgtatttgtactcatttactagc
attattttcctatacttgtacaattaattttcagtaaaactaagaggaaaagattaaaaccataacaaagaaacttgtat
Transcript IDhabu1_s4508_g14341.t2
Definition-
>habu1_s4508_g14341.t2
gtgaggatcaaactcctggcagtgaactgaattagcctgcaatactgcattacaacattctaacatataaaatggaataa
catctaaaattacaaaaatgtagtagcatctaaaacttaagtaaaatgtgaaaatataagactacatgaaatacacttgt
caatgggaaattggcccatcaaggtccagcagctcttcctactagtcacatgcgctgtaataaaaggcagttcatctatc
agcagcatctggacataggctgagtctgagagacaaggatatctgctaactggagggaggataaatcaggaaaacctgaa
cagtctcagcagaagaatggaatgaggcaatttgttttttgaaatgtttgattaaaaaaaacacacataccgttacctag
tcagaagtcttaccattcttgataggatggaggtttctaatgttttcaagagccaaaccccctttccttctgagtctact
ttaaaagtcaaagttgacaggaagaacttgccatcttaccaagctatgttgtctgcaatgagggcaaaaatgccttttat
gtatcagagagatgtcagccatgttgagtcgcattatgcacactatcagaaacaatgtcttaagaatgtatccaagagca
ttcatttttccaaagaaactattaaaccatcagctttatcttataaagattatgaccctaaaggtctatatgatttttcc
agtgtcattcgtccatgtaaagatgaagacattatttctaaaaagccaaggcaaccaagaaagctgaaaccatcaagaag
attacctcggttgagggaaccagaaattgctcatgtccaagaaactactgggaatctccctctgttcttagaagactgta
tctgggaagccaaagtagaaagtacccaagcagagcccacattgctggtacccattcctcctcctcctcctctttctcct
cctccttctgaccttccaaatatccaggcattccagaccaaacctcttgagaagttagaagactcaagtaggaaaagaca
gtccaaatacacaatctgggatgaaccagaagaagaaaaactggggtgggaagaaagactgttaacaaagataagcaaaa
caacagctcaatggattgtgaacaatcaaacctcttgggggggttgggttcagagtaagctaaaacatttcaagaaacaa
aaatatgactggaacagcatcagatatgtactcccttgtgaaaatgatgtggaattactggacgaaattctagcagagga
aacaatggaaggaggtcctgttcccagagatgaacaaaagaaactagagacacctctctctgcttactatcgattgccat
cttttcatgcaagagtgctgtacgaggatgatctactttttcaaaatcaaacagcagaaaaaatatcaatgaaatgtctc
agaccagcgactcctattaaacggcatgaacggctgcaccctaggactgggaaatattcatatatgacccagaatgtctt
tgaacaagaactttattttgggtcagccaagattatccaccaaaaaatcaagaaggatcgtatcattctggataatcatg
atgaatataacaaacatctagaacaatgctacccaagacctcccgaaatctggagcttcaggccaccaaaagggacaact
aaaaaagtacagaagggaatgatccactggaaaacacttcccactcttattgaagatttttcccaagtggatgaaataca
atcacctgactcaactggaagagaaagagatctgtggcctaaacaggaagaaaacttatctgagactgttcgcatctgta
agacaatgttggaacaatggaaagctgcctggaaatttgatcctcattggcagacagcaactatagaaggaatacttgca
gaccttgctgatctgcatgttcaaaatcggatcaatggtttacttgtctgtgcatctgctgtgcttgagcgtccctgtaa
agtcccaaatacaagtcaggagtcagtaataggactagatactttcacgaagggcatagagattgaggatataccgaaaa
aaatacagcctttgctgcaaaaaactctgtttgatacggatgcacatgtacgaatggcagctgcagtatgcttctatgcc
atgtggaaaccaaatccagaggcacagtctattatgaagaatgctctgatacatggtaattctgcagacagctgggcagc
agctcaagctctagcactggaaggaattgccagtttccaggtagtgaaaaggattctgtctcagatttttgatcaaaacg
atgatgcctcagaagaacaggcatgtcttttgttagctcggctcagcaaacacacgggtttggttcattgtttactggca
tcagaattgaacagctatcaatggatacatcgggttttggcatgtaaaacattgtctcgtattccagggagcgtcaccca
ggacctcaagaacaaaattgtccaactgatgtggacagattggaaaattgaggtacgccaggcagctgccaaggttttgg
gacatttgaaacttggaaaagaagtccatgatcagctgagagacaatctaaaaaggggagattgccggaagaaagtggaa
gctctttcgttgattggctggctgaaattcatgacagccaggctgctccctggctttcttcagtgtttctctgatgattt
tgtagctgtcagaaaagaagcttgctgggcagccggagcacttcagattaaagaagagacagtactgaaatgccttttca
agatcatgcagaccgatcctttatggaaaatcaaagctcttgccatcagagctttgggtcagataggtgaggcaagtcct
tacctaaaagaccttcttctctgggcccttcattatgaagaagatcctggagtacggagggaagcctgccggagtatcat
cactctcaaaatgcaggatgaaactgttcgggctactttactgatgagaatgatactggaaccaaatgagaaagtgaaag
aagaagtgagtcgtgctgtgacaaatttcaaatttgaacaagaggaagagcaagaaatgatccaaaaaatcaagaatgag
atttccagattaagccaaacacccctagtgataaagaaagtactaaaacttcaagaagtaatagaaaagatgtggcatga
agcccactgcatttatcgggaaaagggagacatctttgcatatagagatattcgtgacatcttccttgatgttgttaaaa
ctgctttcactgatcaaacacaaacaccaagcaggaagttttcaaacctttggattactatcataaatgtactactggat
cacaaacgcttcaatatcatcataatgaggggcaaagccttgagttccagcaggagtcagccttggttaggaatccctcc
aaatccctggacacgaagagccttttatgaggcactaaaaagacacaaggcagaaagggaaaaacatctcaagaaatcaa
aaacaactacagaaaagcataaagaatccgaggacatcgaaaagggcaaaacaaaaatatctgctgtccattttgaatca
taacaggttacttggctgaccctttcactgcggaagatgcagcagaatgcagtggtgtaactctgctatgctgaaaaact
cagtctgatggaatgctataagctcagtttgttacagaaaagtgttataagtattggagaatgttagatgagtttaaagc
agttatgttctgtatttgtaaatgcagatttcctcttaattttgtatttgtactcatttactagcattattttcctatac
ttgtacaattaattttcagtaaaactaagaggaaaagattaaaaccataacaaagaaacttgtat

Protein
Protein IDhabu1_s4508_g14341.t1
Definition-
>habu1_s4508_g14341.t1
MLSAMRAKMPFMYQRDVSHVESHYAHYQKQCLKNVSKSIHFSKETIKPSALSYKDYDPKGLYDFSSVIRPCKDEDIISKK
PRQPRKLKPSRRLPRLREPEIAHVQETTGNLPLFLEDCIWEAKVESTQAEPTLLVPIPPPPPLSPPPSDLPNIQAFQTKP
LEKLEDSSRKRQSKYTIWDEPEEEKLGWEERLLTKISKTTAQWIVNNQTSWGGWVQSKLKHFKKQKYDWNSIRYVLPCEN
DVELLDEILAEETMEGGPVPRDEQKKLETPLSAYYRLPSFHARVLYEDDLLFQNQTAEKISMKCLRPATPIKRHERLHPR
TGKYSYMTQNVFEQELYFGSAKIIHQKIKKDRIILDNHDEYNKHLEQCYPRPPEIWSFRPPKGTTKKVQKGMIHWKTLPT
LIEDFSQVDEIQSPDSTGRERDLWPKQEENLSETVRICKTMLEQWKAAWKFDPHWQTATIEGILADLADLHVQNRINGLL
VCASAVLERPCKVPNTSQESVIGLDTFTKGIEIEDIPKKIQPLLQKTLFDTDAHVRMAAAVCFYAMWKPNPEAQSIMKNA
LIHGNSADSWAAAQALALEGIASFQVVKRILSQIFDQNDDASEEQACLLLARLSKHTGLVHCLLASELNSYQWIHRVLAC
KTLSRIPGSVTQDLKNKIVQLMWTDWKIEVRQAAAKVLGHLKLGKEVHDQLRDNLKRGDCRKKVEALSLIGWLKFMTARL
LPGFLQCFSDDFVAVRKEACWAAGALQIKEETVLKCLFKIMQTDPLWKIKALAIRALGQIGEASPYLKDLLLWALHYEED
PGVRREACRSIITLKMQDETVRATLLMRMILEPNEKVKEEVSRAVTNFKFEQEEEQEMIQKIKNEISRLSQTPLVIKKVL
KLQEVIEKMWHEAHCIYREKGDIFAYRDIRDIFLDVVKTAFTDQTQTPSRKFSNLWITIINVLLDHKRFNIIIMRGKALS
SSRSQPWLGIPPNPWTRRAFYEALKRHKAEREKHLKKSKTTTEKHKESEDIEKGKTKISAVHFES
Protein IDhabu1_s4508_g14341.t2
Definition-
>habu1_s4508_g14341.t2
MLSAMRAKMPFMYQRDVSHVESHYAHYQKQCLKNVSKSIHFSKETIKPSALSYKDYDPKGLYDFSSVIRPCKDEDIISKK
PRQPRKLKPSRRLPRLREPEIAHVQETTGNLPLFLEDCIWEAKVESTQAEPTLLVPIPPPPPLSPPPSDLPNIQAFQTKP
LEKLEDSSRKRQSKYTIWDEPEEEKLGWEERLLTKISKTTAQWIVNNQTSWGGWVQSKLKHFKKQKYDWNSIRYVLPCEN
DVELLDEILAEETMEGGPVPRDEQKKLETPLSAYYRLPSFHARVLYEDDLLFQNQTAEKISMKCLRPATPIKRHERLHPR
TGKYSYMTQNVFEQELYFGSAKIIHQKIKKDRIILDNHDEYNKHLEQCYPRPPEIWSFRPPKGTTKKVQKGMIHWKTLPT
LIEDFSQVDEIQSPDSTGRERDLWPKQEENLSETVRICKTMLEQWKAAWKFDPHWQTATIEGILADLADLHVQNRINGLL
VCASAVLERPCKVPNTSQESVIGLDTFTKGIEIEDIPKKIQPLLQKTLFDTDAHVRMAAAVCFYAMWKPNPEAQSIMKNA
LIHGNSADSWAAAQALALEGIASFQVVKRILSQIFDQNDDASEEQACLLLARLSKHTGLVHCLLASELNSYQWIHRVLAC
KTLSRIPGSVTQDLKNKIVQLMWTDWKIEVRQAAAKVLGHLKLGKEVHDQLRDNLKRGDCRKKVEALSLIGWLKFMTARL
LPGFLQCFSDDFVAVRKEACWAAGALQIKEETVLKCLFKIMQTDPLWKIKALAIRALGQIGEASPYLKDLLLWALHYEED
PGVRREACRSIITLKMQDETVRATLLMRMILEPNEKVKEEVSRAVTNFKFEQEEEQEMIQKIKNEISRLSQTPLVIKKVL
KLQEVIEKMWHEAHCIYREKGDIFAYRDIRDIFLDVVKTAFTDQTQTPSRKFSNLWITIINVLLDHKRFNIIIMRGKALS
SSRSQPWLGIPPNPWTRRAFYEALKRHKAEREKHLKKSKTTTEKHKESEDIEKGKTKISAVHFES

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