Gene
| Gene Model ID | habu1_s475_g02159 |
|---|---|
| Locus | habu1_scaffold475 : 192666 ... 234300 : + |
| To GenomeBrowser | habu1_scaffold475:192666..234300 |
| Genes list of scaffold | habu1_scaffold475 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sorting nexin-20 | GO:0035091 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s475_g02159.t1 | 1 | 1 | PX | 98 | 193 | 3.5e-14 | 52.5 | 4.2e-17 | 3.5e-14 | 52.5 |
| habu1_s475_g02159.t1 | 1 | 1 | TPR_12 | 202 | 267 | 8.8e-06 | 25.5 | 4.8e-07 | 0.0004 | 20.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s475_g02159.t1 | gi|602633508|ref|XP_007423632.1| | PREDICTED: sorting nexin-20 [Python bivittatus] | 0.0 |
| habu1_s475_g02159.t1 | gi|327278599|ref|XP_003224048.1| | PREDICTED: sorting nexin-20 [Anolis carolinensis] | 0.0 |
| habu1_s475_g02159.t1 | gi|723121226|ref|XP_010280908.1| | PREDICTED: sorting nexin-20 [Phaethon lepturus] | 0.0 |
| habu1_s475_g02159.t1 | gi|700377691|ref|XP_009943368.1| | PREDICTED: sorting nexin-20 [Opisthocomus hoazin] | 0.0 |
| habu1_s475_g02159.t1 | gi|543727283|ref|XP_005504745.1| | PREDICTED: sorting nexin-20 isoform X1 [Columba livia] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.2 |
| Nose | 0.2 |
| Brain-1 | 0.2 |
| Eye | 0.0 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.2 |
| Brain-2 | 0.1 |
| Spleen | 7.0 |
| Lung | 0.3 |
| Liver | 0.6 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.2 |
| Large intestine | 0.8 |
| Stomach | 0.2 |
| heart | 0.1 |
| ovary | 0.0 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s475_g02159.t1 |
|---|---|
| Definition | - |
>habu1_s475_g02159.t1 atatcaaataatttccagaattctatcaggtcacctagccatcacccaccactatacctactgattatatttgtctctgg aagctttacgatggatgaaaagcagggctgctcaggagcaggagaaggacatcaagatttagcagagacatccaagcctc ctatggtcatcccttcaggtgaagaggatgattatgaaatcatgaactcattccaagcaccccaggaagcaaaagagacc accaaccaaccaggtgagaaaagtcccaattcttccatgacaactaaagaacttcaggaatactggcggaatgagaaacg gagctgccgagaagtcaaggtgctttttgaaatcccatcagccaaaattgtagagaaggctttctctaaatatgtgaagt accaaatcatcataatccagactggcagctttgacagcaacgtatcaatgattgaacgccggtattctgatttcgaaaag ctgcacacgagcctgtttaaagagttttatgacgaaatggaagaccttgtctttcccaaaaagatcctgactggcaattt catggaggaagtcatcctggaaagaaaactcgctttccaggattatttgcgaattctgtactccatggaattcatcagga catctcggatgtttattgacttcttaacgaagcctgagctggaagaggcctacagctgccttcggggaggacaatacacc aaagcgttggaaggtcttctggaggccgtcgctttgctagagaagctgacaaggcaccggcccattctgttggttcccac cctctgcgccatccttgtatgtcacaaagatctggagaacttcaaaagcgccttcgaatttggagagaaggccctacagc gcttagaaaaacaaactggtcaccggtactacctaccactgctggaaacgatcatctccttagcatatgaacttgggaaa gacttcctgttcttccaaaagaagatggaagagaggaaggccaaaaagcttccgcagaaaatggacaagttatatttgga cagtaaagttgaaatgaaaggcatccaactctgcagttaccgattgtctataatatgtctgtacccttatggcagagaag aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaattgttttgacagatttgaaatatttgactttgaga gctattttggctgggttttttggagttttagattaggtccttgggttaatttatttgaaccaagtttgtcttgttttcat ctaccagcccaatgtctcaagacagcccctgaattgagttgccaatagtgtttctcaggaaatgggatcagagccaattg ttttgtttttgtaaagaagggattcaggacagcggtgaaacaagaaacaaagacacgatgaattcaaacttcaaaaaaga aatgatatgtatatacatctgaactagtcatttttttttaattaacaggggtatctcttggcacagttttgctattaaat aaataaagcatttagtcaaaaccatctat |
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Protein
| Protein ID | habu1_s475_g02159.t1 |
|---|---|
| Definition | - |
>habu1_s475_g02159.t1 MDEKQGCSGAGEGHQDLAETSKPPMVIPSGEEDDYEIMNSFQAPQEAKETTNQPGEKSPNSSMTTKELQEYWRNEKRSCR EVKVLFEIPSAKIVEKAFSKYVKYQIIIIQTGSFDSNVSMIERRYSDFEKLHTSLFKEFYDEMEDLVFPKKILTGNFMEE VILERKLAFQDYLRILYSMEFIRTSRMFIDFLTKPELEEAYSCLRGGQYTKALEGLLEAVALLEKLTRHRPILLVPTLCA ILVCHKDLENFKSAFEFGEKALQRLEKQTGHRYYLPLLETIISLAYELGKDFLFFQKKMEERKAKKLPQKMDKLYLDSKV EMKGIQLCSYRLSIICLYPYGREEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEELF |
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