Gene
| Gene Model ID | habu1_s4826_g14847 |
|---|---|
| Locus | habu1_scaffold4826 : 1011647 ... 1057193 : + |
| To GenomeBrowser | habu1_scaffold4826:1011647..1057193 |
| Genes list of scaffold | habu1_scaffold4826 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| short transient receptor potential channel 3 isoform x1 | GO:0005262 GO:0005887 GO:0010524 GO:0033198 GO:0051592 GO:0070588 GO:0070679 GO:1903244 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4826_g14847.t1 | 1 | 1 | Ank_4 | 138 | 187 | 3.2e-10 | 40.2 | 2.8e-10 | 4.1e-07 | 30.3 |
| habu1_s4826_g14847.t1 | 1 | 1 | Ank_2 | 139 | 217 | 1.0e-12 | 48.2 | 2.5e-12 | 3.7e-09 | 36.7 |
| habu1_s4826_g14847.t1 | 1 | 1 | TRP_2 | 287 | 349 | 3.3e-30 | 103.8 | 2.2e-33 | 3.3e-30 | 103.8 |
| habu1_s4826_g14847.t1 | 1 | 1 | Ion_trans | 531 | 723 | 5.7e-26 | 91.0 | 8.5e-29 | 1.3e-25 | 89.8 |
| habu1_s4826_g14847.t1 | 1 | 1 | PKD_channel | 586 | 730 | 1.8e-07 | 29.9 | 2.6e-10 | 3.8e-07 | 28.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4826_g14847.t1 | gi|327274106|ref|XP_003221819.1| | PREDICTED: short transient receptor potential channel 3 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s4826_g14847.t1 | gi|697001039|ref|XP_009566558.1| | PREDICTED: short transient receptor potential channel 3 [Cuculus canorus] | 0.0 |
| habu1_s4826_g14847.t1 | gi|641732967|ref|XP_008156874.1| | PREDICTED: short transient receptor potential channel 3 isoform X1 [Eptesicus fuscus] | 0.0 |
| habu1_s4826_g14847.t1 | gi|637307951|ref|XP_008110264.1| | PREDICTED: short transient receptor potential channel 3 isoform X3 [Anolis carolinensis] | 0.0 |
| habu1_s4826_g14847.t1 | gi|543739679|ref|XP_005510737.1| | PREDICTED: short transient receptor potential channel 3 [Columba livia] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.2 |
| Nose | 0.3 |
| Brain-1 | 0.9 |
| Eye | 0.4 |
| fetal fibroblast | 0.5 |
| venom gland-2 | 0.0 |
| Brain-2 | 1.8 |
| Spleen | 0.3 |
| Lung | 1.1 |
| Liver | 0.0 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.4 |
| Large intestine | 0.2 |
| Stomach | 0.1 |
| heart | 0.0 |
| ovary | 0.2 |
| cheek muscle | 0.2 |
Transcript
| Transcript ID | habu1_s4826_g14847.t1 |
|---|---|
| Definition | - |
>habu1_s4826_g14847.t1 gccttctgcttctcttttgcccctcagcagctaccagcaactgaaaggaggggcggccggtgcctcccgagctgaagcca aagcgccgccgcggcatgtccggcacgggcaaaagaattaaggagcggggaagcgtgaccttcacccagcagcagcagca ggacgaggaggaggaggaggaggaggaagaggaagaggaggaaggcacctctgaagaagagcccccgttgccgccgcctt cacagcaaccccgagcacgtcgagggtggaggggggtcaatggcgggctggagcctccccagcaccaggcggtgaaaacc cagcgagaatcgtccggttgctacccgcccctgccagtggtgggcaacgtgttcattgatgaaagtccttctttgagacg agtgactatgatgagagaaaagggaagacgacaagccatcagaggtccagcttttatgtttaacgacaggggcacaagcc tcacagctgaggaagagcgttttctggatgctgcagaatatgggaatattcctgtggtgcgcaaaatgttagaagagtca aaaacattaaatgtgaactgcgttgactatatgggccaaaatgccttgcagcttgctgtaggcaatgaacatcttgaagt gacagaacttttgttaaagaaggagaatctggcacggattggagatgcactattgcttgcaatcagcaaaggatatatcc ggattgtggaagcaatcttgaatcatcctggatttgcagctagcaagcggctaactctgagcccctgtgagcaggaactc caagatgatgacttttattcttatgatgaagatggcacccgcttctccccagacatcacacccatcattttagctgctca ttgtcagaagtatgaagtggtacacatgctgctaataaaaggggcaagaatagagaggccccatgattatttctgcaagt gcaatgattgcactgagaaacagaagattgattcttttagccattctagatcaagaataaatgcatacaaagggttggcc agtccagcctatctatccttgtctagtgaagatccagtcctcactgctctagaacttagcaatgagcttgccaaactggc taatattgaaaaagaattcaagtatgattatcgtaagttgtctatgcaatgcaaggattttgttgttggtgtccttgatc tctgtcgggattctgaagaggtggaagccattctaaacggagatttggaagcagagccagttgaaattcagaggcacaga gcttccctgagtcgtgtcaaactggcaattaaatatgaagtcaaaaagtttgtagcccatcctaactgtcagcaacagct gttgaccatctggtatgaaaacctttcaggattacgagaacaggtcatagctatcaagtgtctggttgtgctgtttgttg cactgggccttccatttcttgccacaggatactggatcgcaccatgtagcaggcttgggaaaattctccggagtccattt atgaaatttgtggcacatgcagcctccttcattattttcttgggactactagtatttaatgcttcagatagatttgaagg catctcagtattaccaaatgaaacagttattgattacccaaaacagatctttcgagttaagacaactcagttcacttgga cagagatgctgatcatgatatgggtgcttgctagactgttggcctttttacaagctacaaaagcacaaaactatgtggac aaatatattcaggagacagatctctctgtggtcacacttccaccagatatagagtattttacttatgctagagataaatg gctcccatctgatccacaaatcatatcggaaggtctttatgcaattgctgttgtgcttagtttctctcggattgcttata ttttacctgcaaatgagagtttcggaccactgcagatttcacttggaagaactgttaaagacattttcaagtttatggtt ctttttattatggtatttcttgcttttatgattgggatgttcatactgtactcttactatcttggagccaaagtaaatgc agcatttactactgttgaagaaagctttaagactttattttggtcaatatttggtttatcagaagttacatcagttgtcc tcaaatatgatcataagttcattgaaaatattggttatgtattatatggaatatataatgtaacaatggttgtggtttta ctcaacatgctgattgcaatgattaatagctcataccaagaaatagaggatgacagtgatgtggagtggaaatttgctcg ctccaaactttggctatcgtactttgatgatggaaaaaccctaccacccccattcagccttgtaccaagtcccaaatcgt tcttttatttcttcatgaagatcattaagttattgaggtgcagaaggaaaagattacagaaagacatggaaatgggaata ggtaactcaaaatccaggctaaatctcttttctcagtccaactcaagagtttttgaatcacacagttttaacagtattct caatcaatcttcacgctatcagcaaatcatgaagagacttataaaacgttacgttttgaaagctcaggtagacaaggaaa atgatgaagtcaatgaaggtgaattaaaggaaattaaacaagatatttctagtcttcgctatgaacttttggaagacaaa tctcaagcaacagaggaattggcaattctcatacataaattaagtgaaaaactcaacccaaatatttcaagatgtgaatg atcccaaatgacattttcaagataattacctggattttgactatagcacaagcattggcaataatatttctgagtgattc atacttgaaaatatgtagatttttagtactaaatgactttatgtacaacttcatttgaaatacagtcttagaaaatttta tgaatttacatgcaaacaatttaagtttatttcaggtataacgcatattttgcatttatttaatacagtacaattgtatc taaataatttttcattgctaatacttctattagtaaaatgaatatttgtagcaaatgaa |
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Protein
| Protein ID | habu1_s4826_g14847.t1 |
|---|---|
| Definition | - |
>habu1_s4826_g14847.t1 MSGTGKRIKERGSVTFTQQQQQDEEEEEEEEEEEEEGTSEEEPPLPPPSQQPRARRGWRGVNGGLEPPQHQAVKTQRESS GCYPPLPVVGNVFIDESPSLRRVTMMREKGRRQAIRGPAFMFNDRGTSLTAEEERFLDAAEYGNIPVVRKMLEESKTLNV NCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLLAISKGYIRIVEAILNHPGFAASKRLTLSPCEQELQDDDF YSYDEDGTRFSPDITPIILAAHCQKYEVVHMLLIKGARIERPHDYFCKCNDCTEKQKIDSFSHSRSRINAYKGLASPAYL SLSSEDPVLTALELSNELAKLANIEKEFKYDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDLEAEPVEIQRHRASLSR VKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQVIAIKCLVVLFVALGLPFLATGYWIAPCSRLGKILRSPFMKFVA HAASFIIFLGLLVFNASDRFEGISVLPNETVIDYPKQIFRVKTTQFTWTEMLIMIWVLARLLAFLQATKAQNYVDKYIQE TDLSVVTLPPDIEYFTYARDKWLPSDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMV FLAFMIGMFILYSYYLGAKVNAAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGYVLYGIYNVTMVVVLLNMLI AMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFSLVPSPKSFFYFFMKIIKLLRCRRKRLQKDMEMGIGNSKS RLNLFSQSNSRVFESHSFNSILNQSSRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLEDKSQATE ELAILIHKLSEKLNPNISRCE |
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