Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s4904_g14928
Locus habu1_scaffold4904 : 303396 ... 499122 : +
To GenomeBrowser habu1_scaffold4904:303396..499122
Genes list of scaffold habu1_scaffold4904

Annotation by Blast2GO
Annotation GO
macrophage colony-stimulating factor 1 receptor EC:2.7.10.1 GO:0000166 GO:0001934 GO:0004714 GO:0005515 GO:0007169 GO:0016020 GO:0016043 GO:0018108 GO:0032879 GO:0035556 GO:0044707 GO:0044767 GO:0048856 GO:0071345

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s4904_g14928.t2 3 1 Ig_2 248 337 1.5e-33 114.7 5.7e-10 8.4e-07 29.0
habu1_s4904_g14928.t2 4 1 I-set 251 331 2.8026e-44 148.9 7.8e-10 1.2e-06 28.3
habu1_s4904_g14928.t2 4 2 I-set 352 434 2.8026e-44 148.9 3.9e-10 5.8e-07 29.2
habu1_s4904_g14928.t2 1 1 Ig_3 362 426 5.0e-18 65.3 7.2e-06 0.011 16.2
habu1_s4904_g14928.t2 1 1 C2-set_2 455 538 2.0e-08 34.0 6.9e-06 0.01 15.7
habu1_s4904_g14928.t2 2 1 Pkinase_Tyr 627 980 0.0 455.6 0.0 0.0 351.6
habu1_s4904_g14928.t2 3 1 Pkinase 629 725 0.0 212.3 1.3e-19 1.9e-16 60.0
habu1_s4904_g14928.t2 3 2 Pkinase 811 978 0.0 212.3 4.5e-31 6.7e-28 97.5
habu1_s4904_g14928.t2 3 2 Ig_2 1232 1296 1.5e-33 114.7 1.5e-06 0.0023 18.0
habu1_s4904_g14928.t2 4 3 I-set 1323 1411 2.8026e-44 148.9 4.8e-06 0.0072 16.1
habu1_s4904_g14928.t2 3 3 Ig_2 1329 1411 1.5e-33 114.7 1.4e-06 0.0021 18.1
habu1_s4904_g14928.t2 4 4 I-set 1515 1603 2.8026e-44 148.9 6.9e-06 0.01 15.6
habu1_s4904_g14928.t2 2 2 Pkinase_Tyr 1687 1787 0.0 455.6 2.0e-32 3.0e-29 101.8
habu1_s4904_g14928.t2 3 3 Pkinase 1688 1783 0.0 212.3 8.3e-17 1.2e-13 50.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s4904_g14928.t2 gi|602649656|ref|XP_007431229.1| PREDICTED: platelet-derived growth factor receptor beta [Python bivittatus] 0.0
habu1_s4904_g14928.t2 gi|637269716|ref|XP_008103040.1| PREDICTED: platelet-derived growth factor receptor beta isoform X1 [Anolis carolinensis] 0.0
habu1_s4904_g14928.t2 gi|637269720|ref|XP_008103041.1| PREDICTED: platelet-derived growth factor receptor beta isoform X2 [Anolis carolinensis] 0.0
habu1_s4904_g14928.t2 gi|701316668|ref|XP_009982171.1| PREDICTED: platelet-derived growth factor receptor beta [Tauraco erythrolophus] 0.0
habu1_s4904_g14928.t2 gi|694847943|ref|XP_009465078.1| PREDICTED: platelet-derived growth factor receptor beta [Nipponia nippon] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 6.7
Venom grand-1 0.6
Pit, infrared sensing 12.6
Nose 0.8
Brain-1 3.5
Eye 1.3
fetal fibroblast 20.3
venom gland-2 0.6
Brain-2 3.0
Spleen 4.8
Lung 3.4
Liver 0.9
Kidney 1.1
Pancreas 0.7
Small intestine 1.3
Large intestine 2.0
Stomach 1.0
heart 1.7
ovary 0.8
cheek muscle 1.0

Transcript
Transcript IDhabu1_s4904_g14928.t1
Definition-
>habu1_s4904_g14928.t1
atctattaacaattttccattttttaaataatattcatatttactaccttaccttttctctgttatatttgttctttttt
taaggtcaaaggatggggaatacctgtacaatgcaattaattgttctcatggaagttggctggttattggcatttaaagc
cttgatcccgcaaatgctcttcaacatcttcatcaacgatttggacaaggggatagatgaaaaactcatcaaatttgcag
atgacaccaagctggcaggaatagccaacactccagaagacaggcttaagatacaggaggatctggacagacttgaacac
tgggcgctatctaacaaaatgaaattcagtggtgaaaaaaggaaatggtccaagtggcaggaaaaggctggagaagaagg
cttggcttctcccaccatctaccctaatcttgacattctgagagtgaagctaggagattcagtcaaattactttgctcag
ggaatttccctgttgagtggatcggtatccagaatgggtccaccgtgatcatgtacgacaatggcaccctctacatgcca
gaggctagttgcaaccagatgggaagctaccaatgtgcttatatcaacaagccagaagaggggattagaactatatatgt
ggctgtgacagatcctgactctgtgtggtgtggccttcagaatgtatattattctgtggaaaggggcagggatgccttgc
ttccgtgcctgattgccaacccaagattcacaggcaacatgaccctccttaaagactcttctccagttgactcagaagtc
tcattcagacctaaggaaggaatatggattcacaaagtagacctgagtgataaagggtcctatgagtgtaaagcccaggt
tcaaggacagtgggtgatttcacccagacttatcctttctatttatgacaaccttcagcctttaacagttactattgaag
gaataaaggaccaagtgcggttacaaggagaacctttcaacatttcctgcagagtacaatatcactcttctgaatatcat
ggcaaatggatctgtccccctactgcaaacgccagcacgaatgagatggaaatcgataatggattagctcagtcatacac
aactgattttaccgtattcattccagcagtgcagttacaagacagtggaaaatatacttgtcttggggaaatttctcaaa
cagttgtaaatgcttcagttactctccaggtactagagaaaggatatctgcatttgtccacattacagaacagaattcag
gagatgaacatgcatcaaaacctgaaccttcatgtgctcattgacgcgtatcctagaccttcaacgtatagatggataca
tgtaaacccatcaggaaagcccacaaacattggccacatggtttttggttatcaaagacacaacaatacactcaggctga
attcgatggaggaaaaaaacagtggcgaatatatattttttgcagacaacggggaagccaatgcatccattcatttttac
atctctgtgaaaactacaccaaaaattacagcgttgaccaacatttccagtggtctccaatgtgaagtaactggctatcc
tcctccacatattcagtggtacaaattgccccccaacatttatagatgtggtcaatatgggattctgattttgaatgatt
ccagtccagagatcatgagtaaaattccctttgtaaaagtgtcattgaagagtgtccttaaggtgcagatggaggacagt
atgatcatttgctgtttcgcagttaatagtgctggaaatgactcccgtccccttacattttatgttgataaggttactgg
aaatgaaaatgaaacccccaaactacttattgcagcctttggaggggcgatgggttttcttcttctgtgtatcgtcttct
tactctataaatataagcagaaaccaaaatatcaagtccactggaagattattgaagcctgtgaaggaaacaattacatc
tttattgaccccacccagcttccttacaatgagaaatgggaatttcctagaaacaatctgcaatttggaaaagtccttgg
agctggagcttttgggaaggtgattgaagctacagcttttgggctgggaaaggaggattctgtcttgaaagtggcagtga
aaatgctgaaatcaactgcgcatacagatgagcaagaagctcttatgtctgagctgaaaatcatgagccatttgggtcac
catgagaatattgtcaatcttctaggagcatgtactcatggaggccctgtccttgtaattactgagttctgtccatttgg
ggacttgctgaatttcctgagagaaaaagctgagcatctcataatcgattgtctaaacttggaatccactcttgatagca
tgatggccgattacaaaaacatctaccttggaaaaaagtatgtccaaagaagcgatagtggatttggatgccaaagtgtt
gacagttacttggaaatgaaatcggtcaccacatcagtgcctatgccagcacaaggccagtgtgatccaggaaaaaggga
acatttcatctctgggatgactgggaagtttaatacatagctactaactataattgcaattgctaaatattcccagtaat
ggacacataataatatgtgcatacgttgtacaacaataatacagcagatatagatgttaaagttatattgccataaataa
agctcgtgcattgttgcaatgtt
Transcript IDhabu1_s4904_g14928.t2
Definition-
>habu1_s4904_g14928.t2
aggtgagcgctgtttgtctctttggctctctttgaaaaccacgcggcttactccggaacagagacggaacctactaggtt
gtcatgcagagaaccgtgcgcctgtgctcggacaacattttcaagcgtttgtccaacctatctgccctttctgcaaagtt
aagggtactacatgaaacagaactgacagccacgatgcctgctttctttcagaagatgctagtcttcttggtcctctttc
taacaagtgtgaaagaaatcagctccctggaaatcactcccagtgcccacgaagttgtcctcaatctctacactgatttt
accctgaaatgttcaggccacaacgaggttttatggaaaacagacaacaagcataccaaactagacgctgtcctggagaa
aaggggcaccatttttaccaacaccctcacattaaggaacttgactggtttaaacacaggtgaatattcctgtgccgaca
atcaagtcctggatgaaaaggccatctacatttttgtaccagatctctccatgcctttcctaccaagcacccaagaagac
acatttgtgttcagcacaggctacgatgaagtcattattccttgccgtgtgacaaatcccaatgctacagtagctcttta
tgaaaagagggttaatgatccagtccctggaatgtattttccacagcaaggctttaaaggccagttcgaagacaagacct
acatctgcaaggcaacaatagaagatgaagagtttgaatctgaaacattctatgtctacaacctccaagtttcttcttct
cctacatccttaatcaacatttctatcagtgcagtgcaaactattttgaaacaaggtgaaaatatcattgtgacatgtac
agtaagaggtattgagttgattggttatacctggagttatcctggacaaatggtaggcaaagaggtaaaacctgcgacaa
ttattgttccaggacattatactagttctatcctaaccattcataatgcagactcaaatgatcagggtctatatgcatgt
gaggccacggatacctatcatggacagaaagaagaacaaagtatctttatcagagtgattgagcgtggctttgtgacttt
ccacactgtactgaatgagaccgtatttgcagaactgcacaaaagtcacaccttcttggtacagatcgaagcctatccaa
gtccaaccatcatctggtttcagaataagaagcccctgacttctgagagcaacagtgatttcgctatcaatagtaggaat
ttgtcagaaaccaggtatcaaactactctgacccttgtgagggtgaaagcaagtgagggaggtctgtacactgtccgagc
atttcacgaagatgatttaaaagagctctccttctatttgcagattaatgtcccagctacagtgacggaactgagagaca
gtagcaacaagacaaatggtgagcaaacggtgatctgtactacagaaggaatgccccaaccagaggttacctggtatacc
tgtaataatgacaaatggtgtactggggaaactaccaagatcctggggaatagctcagaagaaatgaatctgcaaacaaa
tttcacatatgaagatgaccggaaagtttacattgtgacaagcaagctccactttcacagagtagatgagcctattttta
tccaatgtgcagctcaaaatctcttgggtgcacactctcagcagatcaccctagtcccatacaatctaccttttaaagtg
atcattatttcagtaatcgtggcctttgtggttctcatggttcttttcctggtgatcctcattttcttgtggcgaaaaaa
gcctcgatatgaaattcgctggaaggtgattgagtcaatcagctctgatgggcatgaatatatctacgtggaccctatgc
aactgccttatgattccagctgggaggttccaagggacaggctggttttagggcgtacattgggctctggagcctttggg
cgtgtggtggaagcaattgctcacagcctcagccattcccagtccaccatgagagttgctgtgaaaatgctcaagtccac
agcccgaagcagtgaaaagcaggctctgatgtcagaactgaagatcatgagccatcttgggcctcacctgaacattgtga
acttgcttggtgcttgcaccaaaggaggtcccatctacatcgtaactgaatactgtcgctatggagacctggtggactat
ctacataggaacaagcacaccttcctgcagtgctatagtgagaaggccaagcaaggagcagaattgtatgggaatggcat
gcgtgtggaccggctgcagagccatacatccatatctgtagaaagtgatgggggctacatggacatgagtaaggatgaat
cactggattatgtgcccatgtctgacatgaagggtgaaatcaaatatgtagacattgattcttccaattatggcacgacc
tatgagctggacagctattcgccatcaggttcagaaaaagtgaccttgatcagcgagtctcctctcctcagttatattga
tcttgttggagttagcttccaagtggctaagggaatggagtttttagcttctaaaaactgtgtgcaccgtgatctggctg
caaggaacgtactgatctgcgaagggaaactggtgaagatctgtgacttcggcttagcgagggacatcatgcgggattca
aattatatttccaaagggaataccttcttgcctttgaaatggatggcccctgagagcatcttcaataacctctacactac
cttaagtgatgtgtggtcttttgggattcttctatgggaaatattcactctaggtgggactccatatcctgaactgccta
tgaacgagcaattctataatgctattaaacgtggctaccggatgtccaaacctacccatgcatccaatgaaatctatgaa
attatgcagaaatgctgggaagagaagtttgagatccgaccgtctttctttcaactggtagtgcttatggggaacctgct
aacagacagctacaagaagaagtatcaacaggtcaatgaagaattcttgaaaagtgatcacccggctattgtacgtatca
ggcccaggaacacaggatttagtgcttctagatccactgcaagtgacagtgtcagttcaagttctgtcctctatgcagct
gtggagcagaatggagtggacaatgattatatcattcctttgcctgatcttaaaccagaggcagacagtaataatcctcc
ggaggcttctagcagcagagcaagttcaaccctgaatgaagcaaacacatcatctactatatcttgtgacagtcctttag
gccctgagcaagaagaagaagaagaacaagcatctgacacaactgatttgtgctgggtggataccttcattccagagcaa
atgggccctcttttggttctgatagcaacagctatctgtcaaggcttggcttctcccaccatctaccctaatcttgacat
tctgagagtgaagctaggagattcagtcaaattactttgctcagggaatttccctgttgagtggatcggtatccagaatg
ggtccaccgtgatcatgtacgacaatggcaccctctacatgccagaggctagttgcaaccagatgggaagctaccaatgt
gcttatatcaacaagccagaagaggggattagaactatatatgtggctgtgacagatcctgactctgtgtggtgtggcct
tcagaatgtatattattctgtggaaaggggcagggatgccttgcttccgtgcctgattgccaacccaagattcacaggca
acatgaccctccttaaagactcttctccagttgactcagaagtctcattcagacctaaggaaggaatatggattcacaaa
gtagacctgagtgataaagggtcctatgagtgtaaagcccaggttcaaggacagtgggtgatttcacccagacttatcct
ttctatttatgacaaccttcagcctttaacagttactattgaaggaataaaggaccaagtgcggttacaaggagaacctt
tcaacatttcctgcagagtacaatatcactcttctgaatatcatggcaaatggatctgtccccctactgcaaacgccagc
acgaatgagatggaaatcgataatggattagctcagtcatacacaactgattttaccgtattcattccagcagtgcagtt
acaagacagtggaaaatatacttgtcttggggaaatttctcaaacagttgtaaatgcttcagttactctccaggtactag
agaaaggatatctgcatttgtccacattacagaacagaattcaggagatgaacatgcatcaaaacctgaaccttcatgtg
ctcattgacgcgtatcctagaccttcaacgtatagatggatacatgtaaacccatcaggaaagcccacaaacattggcca
catggtttttggttatcaaagacacaacaatacactcaggctgaattcgatggaggaaaaaaacagtggcgaatatatat
tttttgcagacaacggggaagccaatgcatccattcatttttacatctctgtgaaaactacaccaaaaattacagcgttg
accaacatttccagtggtctccaatgtgaagtaactggctatcctcctccacatattcagtggtacaaattgccccccaa
catttatagatgtggtcaatatgggattctgattttgaatgattccagtccagagatcatgagtaaaattccctttgtaa
aagtgtcattgaagagtgtccttaaggtgcagatggaggacagtatgatcatttgctgtttcgcagttaatagtgctgga
aatgactcccgtccccttacattttatgttgataaggttactggaaatgaaaatgaaacccccaaactacttattgcagc
ctttggaggggcgatgggttttcttcttctgtgtatcgtcttcttactctataaatataagcagaaaccaaaatatcaag
tccactggaagattattgaagcctgtgaaggaaacaattacatctttattgaccccacccagcttccttacaatgagaaa
tgggaatttcctagaaacaatctgcaatttggaaaagtccttggagctggagcttttgggaaggtgattgaagctacagc
ttttgggctgggaaaggaggattctgtcttgaaagtggcagtgaaaatgctgaaatcaactgcgcatacagatgagcaag
aagctcttatgtctgagctgaaaatcatgagccatttgggtcaccatgagaatattgtcaatcttctaggagcatgtact
catggaggccctgtccttgtaattactgagttctgtccatttggggacttgctgaatttcctgagagaaaaagctgagca
tctcataatcgattgtctaaacttggaatccactcttgatagcatgatggccgattacaaaaacatctaccttggaaaaa
agtatgtccaaagaagcgatagtggatttggatgccaaagtgttgacagttacttggaaatgaaatcggtcaccacatca
gtgcctatgccagcacaaggccagtgtgatccaggaaaaagggaacatttcatctctgggatgactgggaagtttaatac
atagctactaactataattgcaattgctaaatattcccagtaatggacacataataatatgtgcatacgttgtacaacaa
taatacagcagatatagatgttaaagttatattgccataaataaagctcgtgcattgttgcaatgtt

Protein
Protein IDhabu1_s4904_g14928.t1
Definition-
>habu1_s4904_g14928.t1
MGNTCTMQLIVLMEVGWLLAFKALIPQMLFNIFINDLDKGIDEKLIKFADDTKLAGIANTPEDRLKIQEDLDRLEHWALS
NKMKFSGEKRKWSKWQEKAGEEGLASPTIYPNLDILRVKLGDSVKLLCSGNFPVEWIGIQNGSTVIMYDNGTLYMPEASC
NQMGSYQCAYINKPEEGIRTIYVAVTDPDSVWCGLQNVYYSVERGRDALLPCLIANPRFTGNMTLLKDSSPVDSEVSFRP
KEGIWIHKVDLSDKGSYECKAQVQGQWVISPRLILSIYDNLQPLTVTIEGIKDQVRLQGEPFNISCRVQYHSSEYHGKWI
CPPTANASTNEMEIDNGLAQSYTTDFTVFIPAVQLQDSGKYTCLGEISQTVVNASVTLQVLEKGYLHLSTLQNRIQEMNM
HQNLNLHVLIDAYPRPSTYRWIHVNPSGKPTNIGHMVFGYQRHNNTLRLNSMEEKNSGEYIFFADNGEANASIHFYISVK
TTPKITALTNISSGLQCEVTGYPPPHIQWYKLPPNIYRCGQYGILILNDSSPEIMSKIPFVKVSLKSVLKVQMEDSMIIC
CFAVNSAGNDSRPLTFYVDKVTGNENETPKLLIAAFGGAMGFLLLCIVFLLYKYKQKPKYQVHWKIIEACEGNNYIFIDP
TQLPYNEKWEFPRNNLQFGKVLGAGAFGKVIEATAFGLGKEDSVLKVAVKMLKSTAHTDEQEALMSELKIMSHLGHHENI
VNLLGACTHGGPVLVITEFCPFGDLLNFLREKAEHLIIDCLNLESTLDSMMADYKNIYLGKKYVQRSDSGFGCQSVDSYL
EMKSVTTSVPMPAQGQCDPGKREHFISGMTGKFNT
Protein IDhabu1_s4904_g14928.t2
Definition-
>habu1_s4904_g14928.t2
MQRTVRLCSDNIFKRLSNLSALSAKLRVLHETELTATMPAFFQKMLVFLVLFLTSVKEISSLEITPSAHEVVLNLYTDFT
LKCSGHNEVLWKTDNKHTKLDAVLEKRGTIFTNTLTLRNLTGLNTGEYSCADNQVLDEKAIYIFVPDLSMPFLPSTQEDT
FVFSTGYDEVIIPCRVTNPNATVALYEKRVNDPVPGMYFPQQGFKGQFEDKTYICKATIEDEEFESETFYVYNLQVSSSP
TSLINISISAVQTILKQGENIIVTCTVRGIELIGYTWSYPGQMVGKEVKPATIIVPGHYTSSILTIHNADSNDQGLYACE
ATDTYHGQKEEQSIFIRVIERGFVTFHTVLNETVFAELHKSHTFLVQIEAYPSPTIIWFQNKKPLTSESNSDFAINSRNL
SETRYQTTLTLVRVKASEGGLYTVRAFHEDDLKELSFYLQINVPATVTELRDSSNKTNGEQTVICTTEGMPQPEVTWYTC
NNDKWCTGETTKILGNSSEEMNLQTNFTYEDDRKVYIVTSKLHFHRVDEPIFIQCAAQNLLGAHSQQITLVPYNLPFKVI
IISVIVAFVVLMVLFLVILIFLWRKKPRYEIRWKVIESISSDGHEYIYVDPMQLPYDSSWEVPRDRLVLGRTLGSGAFGR
VVEAIAHSLSHSQSTMRVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIVTEYCRYGDLVDYL
HRNKHTFLQCYSEKAKQGAELYGNGMRVDRLQSHTSISVESDGGYMDMSKDESLDYVPMSDMKGEIKYVDIDSSNYGTTY
ELDSYSPSGSEKVTLISESPLLSYIDLVGVSFQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSN
YISKGNTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMSKPTHASNEIYEI
MQKCWEEKFEIRPSFFQLVVLMGNLLTDSYKKKYQQVNEEFLKSDHPAIVRIRPRNTGFSASRSTASDSVSSSSVLYAAV
EQNGVDNDYIIPLPDLKPEADSNNPPEASSSRASSTLNEANTSSTISCDSPLGPEQEEEEEQASDTTDLCWVDTFIPEQM
GPLLVLIATAICQGLASPTIYPNLDILRVKLGDSVKLLCSGNFPVEWIGIQNGSTVIMYDNGTLYMPEASCNQMGSYQCA
YINKPEEGIRTIYVAVTDPDSVWCGLQNVYYSVERGRDALLPCLIANPRFTGNMTLLKDSSPVDSEVSFRPKEGIWIHKV
DLSDKGSYECKAQVQGQWVISPRLILSIYDNLQPLTVTIEGIKDQVRLQGEPFNISCRVQYHSSEYHGKWICPPTANAST
NEMEIDNGLAQSYTTDFTVFIPAVQLQDSGKYTCLGEISQTVVNASVTLQVLEKGYLHLSTLQNRIQEMNMHQNLNLHVL
IDAYPRPSTYRWIHVNPSGKPTNIGHMVFGYQRHNNTLRLNSMEEKNSGEYIFFADNGEANASIHFYISVKTTPKITALT
NISSGLQCEVTGYPPPHIQWYKLPPNIYRCGQYGILILNDSSPEIMSKIPFVKVSLKSVLKVQMEDSMIICCFAVNSAGN
DSRPLTFYVDKVTGNENETPKLLIAAFGGAMGFLLLCIVFLLYKYKQKPKYQVHWKIIEACEGNNYIFIDPTQLPYNEKW
EFPRNNLQFGKVLGAGAFGKVIEATAFGLGKEDSVLKVAVKMLKSTAHTDEQEALMSELKIMSHLGHHENIVNLLGACTH
GGPVLVITEFCPFGDLLNFLREKAEHLIIDCLNLESTLDSMMADYKNIYLGKKYVQRSDSGFGCQSVDSYLEMKSVTTSV
PMPAQGQCDPGKREHFISGMTGKFNT

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