Gene
| Gene Model ID | habu1_s4904_g14929 |
|---|---|
| Locus | habu1_scaffold4904 : 500003 ... 510743 : + |
| To GenomeBrowser | habu1_scaffold4904:500003..510743 |
| Genes list of scaffold | habu1_scaffold4904 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| macrophage colony-stimulating factor 1 receptor | GO:0005011 GO:0005524 GO:0005886 GO:0007169 GO:0008284 GO:0008360 GO:0009986 GO:0016021 GO:0019903 GO:0019955 GO:0030316 GO:0030335 GO:0031529 GO:0038145 GO:0042517 GO:0042803 GO:0043235 GO:0045217 GO:0046488 GO:0046777 GO:0048015 GO:0061098 GO:0070374 GO:0071902 GO:0090197 GO:2000249 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4904_g14929.t1 | 1 | 1 | Pkinase_Tyr | 37 | 199 | 0.0 | 236.2 | 0.0 | 0.0 | 235.9 |
| habu1_s4904_g14929.t1 | 1 | 1 | Pkinase | 41 | 199 | 1.4e-27 | 96.5 | 3.6e-31 | 1.8e-27 | 96.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4904_g14929.t1 | gi|514789391|ref|XP_005029734.1| | PREDICTED: macrophage colony-stimulating factor 1 receptor-like [Anas platyrhynchos] | 0.0 |
| habu1_s4904_g14929.t1 | gi|564237095|ref|XP_006275442.1| | PREDICTED: macrophage colony-stimulating factor 1 receptor [Alligator mississippiensis] | 0.0 |
| habu1_s4904_g14929.t1 | gi|557276128|ref|XP_006021224.1| | PREDICTED: macrophage colony-stimulating factor 1 receptor [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.5 |
| Venom grand-1 | 0.4 |
| Pit, infrared sensing | 6.2 |
| Nose | 0.2 |
| Brain-1 | 1.3 |
| Eye | 0.4 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.1 |
| Brain-2 | 1.1 |
| Spleen | 2.1 |
| Lung | 0.2 |
| Liver | 0.6 |
| Kidney | 0.2 |
| Pancreas | 0.4 |
| Small intestine | 0.5 |
| Large intestine | 1.0 |
| Stomach | 0.2 |
| heart | 0.4 |
| ovary | 0.2 |
| cheek muscle | 0.2 |
Transcript
| Transcript ID | habu1_s4904_g14929.t1 |
|---|---|
| Definition | - |
>habu1_s4904_g14929.t1 agaactattaaatctccttctgctcagcaatttccagttcattcttgcaaatgcctaccacaaattaattccattagttc cttgggagttacttatatttagtctctaggtaggtaggcctttgttattatgggtgatttgagatgagtgaattctctca agagaattatattttttgacctttcttattttaacgtcctactgctaagttgccttcatggccctctttgtggctatcgt tatctatcaaaggcataccttcagtgacctctgtgaactttctcccaatccaggaaaaagtttggtatcagctgaaggaa aagaagacccacgttctcttgatctctttgacttgctgcagttctccaaccaagtagctcagggaatgactttcctggct tccaaaaattgcatccatcgagatttggcagcacggaatgtgctagtggctgatggactagtggccaagatctgtgactt cggcctggccagagatattgtgaatgacagcaattatgttgtcaaaggcaatgctcgcctcccagtgaaatggatggcac cggagagcatctttgaatgtgtctacacaggacagagcgatgtgtggtcttacggcatccttctctgggagatattctcc ctaggaagaagtccctatcctggcatgaaagtgaataacaagttttatagccttgtgaaacaaggatatcatatggggaa gccagattttgctccagatgatatgtacaatataatgatggcatgctggaaattggagcccactcagcggcctactttca gtcagatctgcaccttaattcagaaacagctggatgccattaaggaacaggattatacaaacttaccctgccccagagag gaagaagacagtggatgtgagcccgccagctactttgaagaatcctgtgagtcgggagaagtggagcaacccctcctgaa cagcaacaattatcagttttgttaggatctgggggatgggcgggggagagggagagagagagagagcctgtcatttctag ctttgtgatggaattattatgaagtttggtggtatgagaaagttttgtattgttatttacctgttagccatccagagtta cgttatataatatgagcagccatacagatcctttaaataaataaccaagcatatttaaagcattattctatcctgaatgt tgaagcactggtattgccccctctgctgtccaagcagtgagaaggaaaataatccagtactacaagagtggaatgattaa aagctgaaactcagaaaatgatttctttagtttagaaaccattgaaattaataatactatttcagatagacacaataaaa caaaactttagagtaaaagcacatttaattttttgaatgggagaaaaaaaaatagaagtataaacagcatgcatggcctg tgaagctagatctgcaaatcatttgtggagtgtattaacctgccataataaatgagatttgcaaaatctaattg |
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Protein
| Protein ID | habu1_s4904_g14929.t1 |
|---|---|
| Definition | - |
>habu1_s4904_g14929.t1 MALFVAIVIYQRHTFSDLCELSPNPGKSLVSAEGKEDPRSLDLFDLLQFSNQVAQGMTFLASKNCIHRDLAARNVLVADG LVAKICDFGLARDIVNDSNYVVKGNARLPVKWMAPESIFECVYTGQSDVWSYGILLWEIFSLGRSPYPGMKVNNKFYSLV KQGYHMGKPDFAPDDMYNIMMACWKLEPTQRPTFSQICTLIQKQLDAIKEQDYTNLPCPREEEDSGCEPASYFEESCESG EVEQPLLNSNNYQFC |
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