Gene
| Gene Model ID | habu1_s4907_g14933 |
|---|---|
| Locus | habu1_scaffold4907 : 11 ... 36769 : + |
| To GenomeBrowser | habu1_scaffold4907:11..36769 |
| Genes list of scaffold | habu1_scaffold4907 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase partial | GO:0009987 GO:0044424 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s4907_g14933.t1 | 1 | 1 | PA | 145 | 200 | 6.7e-08 | 32.1 | 9.0e-11 | 1.3e-07 | 31.1 |
| habu1_s4907_g14933.t1 | 1 | 1 | zf-rbx1 | 244 | 289 | 3.1e-08 | 33.5 | 5.1e-11 | 7.6e-08 | 32.3 |
| habu1_s4907_g14933.t1 | 1 | 1 | zf-RING_2 | 247 | 289 | 3.6e-13 | 49.1 | 5.5e-16 | 8.1e-13 | 47.9 |
| habu1_s4907_g14933.t1 | 1 | 1 | zf-RING_5 | 247 | 289 | 2.9e-07 | 30.1 | 3.8e-10 | 5.6e-07 | 29.1 |
| habu1_s4907_g14933.t1 | 1 | 1 | zf-C3HC4_3 | 247 | 292 | 8.3e-06 | 25.3 | 5.6e-09 | 8.3e-06 | 25.3 |
| habu1_s4907_g14933.t1 | 1 | 1 | zf-C3HC4 | 248 | 288 | 2.1e-07 | 30.5 | 3.0e-10 | 4.5e-07 | 29.4 |
| habu1_s4907_g14933.t1 | 1 | 1 | zf-C3HC4_2 | 248 | 288 | 4.0e-06 | 26.7 | 6.2e-09 | 9.2e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s4907_g14933.t1 | gi|701333378|ref|XP_009979292.1| | PREDICTED: E3 ubiquitin-protein ligase RNF130 [Tauraco erythrolophus] | 0.0 |
| habu1_s4907_g14933.t1 | gi|327265508|ref|XP_003217550.1| | PREDICTED: E3 ubiquitin-protein ligase RNF130 [Anolis carolinensis] | 0.0 |
| habu1_s4907_g14933.t1 | gi|704505713|ref|XP_010079143.1| | PREDICTED: E3 ubiquitin-protein ligase RNF130, partial [Pterocles gutturalis] | 0.0 |
| habu1_s4907_g14933.t1 | gi|529424178|ref|XP_005231932.1| | PREDICTED: E3 ubiquitin-protein ligase RNF130-like [Falco peregrinus] | 0.0 |
| habu1_s4907_g14933.t1 | gi|700435208|ref|XP_009956594.1| | PREDICTED: E3 ubiquitin-protein ligase RNF130, partial [Leptosomus discolor] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.9 |
| Venom grand-1 | 14.6 |
| Pit, infrared sensing | 8.9 |
| Nose | 6.8 |
| Brain-1 | 3.2 |
| Eye | 5.6 |
| fetal fibroblast | 7.4 |
| venom gland-2 | 18.1 |
| Brain-2 | 3.4 |
| Spleen | 7.0 |
| Lung | 7.9 |
| Liver | 38.5 |
| Kidney | 37.6 |
| Pancreas | 8.8 |
| Small intestine | 10.8 |
| Large intestine | 6.5 |
| Stomach | 7.3 |
| heart | 3.2 |
| ovary | 13.5 |
| cheek muscle | 27.7 |
Transcript
| Transcript ID | habu1_s4907_g14933.t1 |
|---|---|
| Definition | - |
>habu1_s4907_g14933.t1 atggagctcgagggcggagtcttgtccctgctgcccggctatgtccttggctgcgctgctctgtgcaggctgcgcctggg ggcgactctcctccaggggggatgctggagaggagggcgccacagggggaggcggggctgggacgatggtgtgtgtgccc acagagagggctccgagtgccgcttctggcacgcgtgccacagtgcagataattccaatctaatatattatacagctctc gtaaatgtcactgtgttgaatcctgatcgttcaacatctgcttcaataacacttgagcgtgcacgctatggacaaacttc tcccaaaataagtgtcaaaggcctacttctggcacctttgccaatcaatggagttccagatcgtttaggatgcgatccac gaacacggtttcagattcctccaaatacaaagcagtggattgctctattgcagcgaggaaattgtacatttaaacaaaaa attctgcgagcagcttcacataatgcttcagctgttgtaatttacaacaatgtatctggcaatgagcctgttaccatgac tcatcaaggaactggagacattgttacggtcatgatcactgaaatgaagaagatcagatataccagtgcacgtgatcgaa atcagcgtcgtcttggagatgctgccaaaaaagctgttggtaaactaacagcaagaactgtaaagaaaggtgataaggaa acagatccagactttgatcactgcgctgtttgcattgaaagctataagcaaaatgatgttgtacgcattctgccatgcaa gcatgtttttcataaaacctgtgtagacccatggctaagtgagcactgtacctgtcctatgtgtaaactgaatattttga aggccttgggaattgtgacaaatgtaccatgtgctgacaatatggcctttgacatggaaagactaaccagaggccagcta ggtaacaggagatcagtacttggtgaccttagcagtgacagctcactcactcttgagcccctacgtacttctggtatatc acaatttccccaggatggagagctgactccaaggacaggcgagatcaatattgctgtaactaaagaatggtttattattg ccagctttggcctcttaagtgccctgacactctgctacatgatcatcaaagccactgcaagtttaaatgctaatgaagct gaatggtattgaagatacaatctaatcagctgctgcaggaagaaagcacttatttcatttaaaataatcattatcatttt ttgataatgtaacaagaatctgttggtacattttgttttcataatttactaatgctaaagctttgtactaagaaaaggat caataaattttttgaaaaaattagcccaa |
|
Protein
| Protein ID | habu1_s4907_g14933.t1 |
|---|---|
| Definition | - |
>habu1_s4907_g14933.t1 MELEGGVLSLLPGYVLGCAALCRLRLGATLLQGGCWRGGRHRGRRGWDDGVCAHREGSECRFWHACHSADNSNLIYYTAL VNVTVLNPDRSTSASITLERARYGQTSPKISVKGLLLAPLPINGVPDRLGCDPRTRFQIPPNTKQWIALLQRGNCTFKQK ILRAASHNASAVVIYNNVSGNEPVTMTHQGTGDIVTVMITEMKKIRYTSARDRNQRRLGDAAKKAVGKLTARTVKKGDKE TDPDFDHCAVCIESYKQNDVVRILPCKHVFHKTCVDPWLSEHCTCPMCKLNILKALGIVTNVPCADNMAFDMERLTRGQL GNRRSVLGDLSSDSSLTLEPLRTSGISQFPQDGELTPRTGEINIAVTKEWFIIASFGLLSALTLCYMIIKATASLNANEA EWY |
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