Gene
| Gene Model ID | habu1_s499_g02309 |
|---|---|
| Locus | habu1_scaffold499 : 604261 ... 606098 : - |
| To GenomeBrowser | habu1_scaffold499:604261..606098 |
| Genes list of scaffold | habu1_scaffold499 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx28 | GO:0003676 GO:0005739 GO:0016787 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s499_g02309.t1 | 1 | 1 | DEAD | 165 | 359 | 1.0e-32 | 112.9 | 4.2e-36 | 1.6e-32 | 112.3 |
| habu1_s499_g02309.t1 | 1 | 1 | Helicase_C | 435 | 510 | 1.1e-19 | 70.0 | 6.1e-23 | 2.2e-19 | 69.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s499_g02309.t1 | gi|327276465|ref|XP_003222990.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Anolis carolinensis] | 0.0 |
| habu1_s499_g02309.t1 | gi|602638616|ref|XP_007426135.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28, partial [Python bivittatus] | 0.0 |
| habu1_s499_g02309.t1 | gi|530592777|ref|XP_005290007.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Chrysemys picta bellii] | 0.0 |
| habu1_s499_g02309.t1 | gi|564260941|ref|XP_006269374.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Alligator mississippiensis] | 0.0 |
| habu1_s499_g02309.t1 | gi|586459458|ref|XP_006860391.1| | PREDICTED: probable ATP-dependent RNA helicase DDX28 [Chrysochloris asiatica] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.1 |
| Venom grand-1 | 2.9 |
| Pit, infrared sensing | 2.0 |
| Nose | 2.0 |
| Brain-1 | 1.6 |
| Eye | 1.8 |
| fetal fibroblast | 4.3 |
| venom gland-2 | 3.2 |
| Brain-2 | 1.4 |
| Spleen | 2.7 |
| Lung | 2.3 |
| Liver | 4.0 |
| Kidney | 3.6 |
| Pancreas | 6.6 |
| Small intestine | 2.0 |
| Large intestine | 2.0 |
| Stomach | 2.9 |
| heart | 3.4 |
| ovary | 32.5 |
| cheek muscle | 5.9 |
Transcript
| Transcript ID | habu1_s499_g02309.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02309.t1 gaccgtcgcgttctcccttaccgctccatcatggcgctctcgctttgggggattcgtggatcggcggcggcggccgcccg attcccctcgtggctgccgccggccgtgcggggctggaggctgcgccaggcctccggagcgtccccgcccgacgaccgcg tggtgcggatcccccacgcttggaagctgcggctggagcggccggcgtccaagcgggagcgaggcgggagcccggagagg gagggcagcgcgtcctttgggggaaagctgctgctgcggacccggagacgcgagctgagccaggcggcccggcacacggt gggccgcctggagaggccgcgcttggtgtcggacggctggaagcaccgcttgtcccgcggggattatttccagctggagc ggacgcggaaggagcctcttcgggagccggccgacggggaggccccgtccaccttcctcgagctggggctggagcctcgc gtggcggcccccttgcagcaggtgctgggcgtctcgcggcccacgccggtgcagcagcgcaccatcccggccctgctgaa ggggggccacgcgctgtgcggggcggaaaccggcagcggcaaaaccctggcctacctgctgcctctcttccagcggctct tgcaagccccgaagctccccgacaaggacgcttatgccacctctccccgctccttggtggtggtgccctcccgagaactc gcggggcaggtgcgtagagttgccgcctccttggctggtcctttggacttgcaggtgaaggaggtcggcggtggccgggg cacggctgtgcttcggcgccggatccgtgaaggtcccactgacctcttgattgccacgcccggtgctctgagcaaagtcc tgaagaggaagatgttgtccttggagaaactgctcttcttggtgttggatgaagcggatactctcctggatgcctcgttc atcgatctggtgaaagatatcgttcagcatgctttcttgaaggatgtcgttcagcaagcttttctggacccgcattctga agacagggatgaggcttgggatcccaaagcccagctggtggcgatgggtgctacccttccaaaggggctgagtcagatgt tgagcgagtctgccgatctctccaacttcaccgtattgaccggttcaagtttgcattgccttcagcctcacgtggagcaa aggttcgtacgtttgaagggctgcgacaaagtagcggagctgctacaacacctcaaagagcgagggccctcctccggagc cgttattgttttctgcaacagagccagcactgtgaactggctgagttacattttagaagaccataagatcaaacatttac gcctgcagggagaaatagcagctgatacgcgagctggcatatttaatgcctttagaagaggcgagtctgacattctgttg tgtactgatatcgcttcccgtggattggacaccattcatgttgagctcatcgttaattatgacttccctttaacgttgcc agattatctgcatcgggtgggacgtgttggtcgcatcggcagtaaattccctgggactgcggtcagttttgtaacccata agtgggatgtagatcttgttcggaaaatagaaacggcagctcgcaaaagaagtcccctcccagggctagatatagttgtt aaggagtctttgccgaaaaagaagaaattctgaatttgcctggaggacctagaatgaatctaatgtttgcagcagttcct aatatatttctgacattttgtgtatttgatttttgaccactcagttccttaataaaactgtgctaatacatggatgct |
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Protein
| Protein ID | habu1_s499_g02309.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02309.t1 MALSLWGIRGSAAAAARFPSWLPPAVRGWRLRQASGASPPDDRVVRIPHAWKLRLERPASKRERGGSPEREGSASFGGKL LLRTRRRELSQAARHTVGRLERPRLVSDGWKHRLSRGDYFQLERTRKEPLREPADGEAPSTFLELGLEPRVAAPLQQVLG VSRPTPVQQRTIPALLKGGHALCGAETGSGKTLAYLLPLFQRLLQAPKLPDKDAYATSPRSLVVVPSRELAGQVRRVAAS LAGPLDLQVKEVGGGRGTAVLRRRIREGPTDLLIATPGALSKVLKRKMLSLEKLLFLVLDEADTLLDASFIDLVKDIVQH AFLKDVVQQAFLDPHSEDRDEAWDPKAQLVAMGATLPKGLSQMLSESADLSNFTVLTGSSLHCLQPHVEQRFVRLKGCDK VAELLQHLKERGPSSGAVIVFCNRASTVNWLSYILEDHKIKHLRLQGEIAADTRAGIFNAFRRGESDILLCTDIASRGLD TIHVELIVNYDFPLTLPDYLHRVGRVGRIGSKFPGTAVSFVTHKWDVDLVRKIETAARKRSPLPGLDIVVKESLPKKKKF |
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