Gene
| Gene Model ID | habu1_s499_g02316 |
|---|---|
| Locus | habu1_scaffold499 : 817162 ... 927974 : + |
| To GenomeBrowser | habu1_scaffold499:817162..927974 |
| Genes list of scaffold | habu1_scaffold499 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sphingomyelin phosphodiesterase 3 | EC:3.1.4.12 GO:0000137 GO:0002244 GO:0004767 GO:0006684 GO:0006687 GO:0030072 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s499_g02316.t1 | 1 | 1 | Exo_endo_phos | 417 | 683 | 1.7e-09 | 37.9 | 4.0e-13 | 3.0e-09 | 37.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s499_g02316.t1 | gi|602645590|ref|XP_007429233.1| | PREDICTED: sphingomyelin phosphodiesterase 3 [Python bivittatus] | 0.0 |
| habu1_s499_g02316.t1 | gi|327276495|ref|XP_003223005.1| | PREDICTED: sphingomyelin phosphodiesterase 3 [Anolis carolinensis] | 0.0 |
| habu1_s499_g02316.t1 | gi|564244503|ref|XP_006261385.1| | PREDICTED: sphingomyelin phosphodiesterase 3-like isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s499_g02316.t1 | gi|557267487|ref|XP_006019123.1| | PREDICTED: sphingomyelin phosphodiesterase 3 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s499_g02316.t1 | gi|530639146|ref|XP_005306369.1| | PREDICTED: sphingomyelin phosphodiesterase 3 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.7 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 2.3 |
| Nose | 0.2 |
| Brain-1 | 9.9 |
| Eye | 2.0 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 8.8 |
| Spleen | 0.2 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.4 |
| Large intestine | 1.8 |
| Stomach | 1.6 |
| heart | 0.0 |
| ovary | 0.0 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s499_g02316.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02316.t1 cggcattaaaaagccgcaaatcaagttgaaataatgactgtatgcggaaggggacaccgaaaattgtcctcggcagctga tgtgtctccaaataaggagctacaggatggttctctctttaacaagcttctactcattgctttttctcctgctccctggt atcctaaagcagtgatccccaacctttttggcaccagggaccggtttcacggaagacaactttttccacaagctagggcg actaaactagtagacgagcgaaatgctgtggatgtagtatacttagacttcagtaaggcatttgataaagtagaccacaa cctactccttggaaaggaatttctgcaaacgtctgccaacggtggaaaagtggaacgaaggcttaaaacagagatcttaa aagagaagattcgttttctagacacttccatttctcatgtcccgataacctccatgttgcctgcatccatgagacgtcca tacatttattccagactacaggacaaaagccagatcaacggatccaccttactcaccgagtggaaggcggccagcaatgg gaaaagcttttgttttagcagtgccaacgtctgcttgctcccagattccttggcgagattaaacaatgtcttcaacacac aggcccgagcaaaggaaattgggcgaaggatccggaatggggcaagcaggccccaaatcaaaatctacatagattctccc accaacacatcgatcagtgcagcaagcttcagcagcctcatttcgccacaaggtggagatggcaataaccgggcggtcaa cacgagcattaagagaaccacgtccatggagtataaaggggacaacgctggctctaaccatgaagatggcagagatccca aagctggaggagatgctggtgatggagaagatggtaacacttgcattgtgcgcataggtggtgaggacaatggtcatatt tcagacctagaggccgacgggatgggaagccacatgaataacagcaagggagcagtcaactgttcacctgaatcagaagc tgagatcctgaaaggtcaaacacccaaccataagcaaaaggaaggggattctggaagcttggatagttatactgcctcgc gagagtccttggtgaagatgcgctctggagatggtccagttgaccaaagcaccgtgaacagtaaactcctctacaaggca tcgcttatgaagaagacctctgtgaagaaaaagaagaatatggatgagccttttgaccacgagatctccgctttctttcc tgccaacctggacttcctctgcttgcaggaagtgtttgacaaaagggcggcagagaagttgaaaaatcagctgcaccgct actttgagtacattctgtatgacgttggagtctacagctgccgtggctgctgtagtttcaaatttgtgaacagtggcctg ctttttgccagtcgctacccagttatggatgctgcctatcactgttaccccaacggaaaaggaacagacgccttgtcttc gaagggtgccctgtttctcaaggtgcaagtgggaagtacacctcaggaccaaagaattgtgggatacatttcctgcaccc acttgcaagctctggcagaggacacaactgttcgatgtgaacaactggatctgcttcaggattggctggctgattttaga aaatctacctcctcgtccagtacagccaatccagaggagctggtggcatttgatgtggtctgtggcgacctgaactttga caattgttcgtcagatgacaagctggaacagcagcactccttgttcatccgctacaaggacccatgccgccaaggtccag gggaggacaaatcgtgggcaattggaaccttgttagatccgaaaggactatatgatgaagaagtgtgcactccagataac ttacagaagacgatggaaagcgaagacggacggaaagccttcctcgagtttcccaccagtaagagccaggcctcaagtca gaagggaaggaaaggggctctgaaaggcaacggcagaaggattgactacctgctttacagcaaggaaggactctacctgg agtggaaaacagaagtagaagaattcagttttatcacccaattggcaggactcacggatcacctgcctgtcgccatgcgg ctgattgtttcgactggagaagaagattcttaaataagggagggtggtcattttttcctccagagcttagaagaagaggg aacttctaaacttgtgaccaagatgcaagaggggtcttttctggtgccccccccccatgcctctaaaacccctcaggacg gaccaggctggtttccaattgatttttctacattcaaaaccc |
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Protein
| Protein ID | habu1_s499_g02316.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02316.t1 MTVCGRGHRKLSSAADVSPNKELQDGSLFNKLLLIAFSPAPWYPKAVIPNLFGTRDRFHGRQLFPQARATKLVDERNAVD VVYLDFSKAFDKVDHNLLLGKEFLQTSANGGKVERRLKTEILKEKIRFLDTSISHVPITSMLPASMRRPYIYSRLQDKSQ INGSTLLTEWKAASNGKSFCFSSANVCLLPDSLARLNNVFNTQARAKEIGRRIRNGASRPQIKIYIDSPTNTSISAASFS SLISPQGGDGNNRAVNTSIKRTTSMEYKGDNAGSNHEDGRDPKAGGDAGDGEDGNTCIVRIGGEDNGHISDLEADGMGSH MNNSKGAVNCSPESEAEILKGQTPNHKQKEGDSGSLDSYTASRESLVKMRSGDGPVDQSTVNSKLLYKASLMKKTSVKKK KNMDEPFDHEISAFFPANLDFLCLQEVFDKRAAEKLKNQLHRYFEYILYDVGVYSCRGCCSFKFVNSGLLFASRYPVMDA AYHCYPNGKGTDALSSKGALFLKVQVGSTPQDQRIVGYISCTHLQALAEDTTVRCEQLDLLQDWLADFRKSTSSSSTANP EELVAFDVVCGDLNFDNCSSDDKLEQQHSLFIRYKDPCRQGPGEDKSWAIGTLLDPKGLYDEEVCTPDNLQKTMESEDGR KAFLEFPTSKSQASSQKGRKGALKGNGRRIDYLLYSKEGLYLEWKTEVEEFSFITQLAGLTDHLPVAMRLIVSTGEEDS |
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