Gene
| Gene Model ID | habu1_s499_g02322 |
|---|---|
| Locus | habu1_scaffold499 : 1175082 ... 1202677 : + |
| To GenomeBrowser | habu1_scaffold499:1175082..1202677 |
| Genes list of scaffold | habu1_scaffold499 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase ii subunit rpb3 | EC:2.7.7.6 GO:0003677 GO:0003899 GO:0005665 GO:0005730 GO:0005737 GO:0006144 GO:0006206 GO:0006366 GO:0015630 GO:0046983 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s499_g02322.t2 | 1 | 1 | RNA_pol_L | 20 | 256 | 1.1e-12 | 46.8 | 2.0e-16 | 1.5e-12 | 46.4 |
| habu1_s499_g02322.t2 | 1 | 1 | RNA_pol_A_bac | 50 | 177 | 4.0e-38 | 130.0 | 8.59977e-42 | 6.4e-38 | 129.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s499_g02322.t2 | gi|350539355|ref|NP_001232142.1| | DNA-directed RNA polymerase II subunit RPB3 [Taeniopygia guttata] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 19.9 |
| Venom grand-1 | 23.9 |
| Pit, infrared sensing | 18.9 |
| Nose | 16.5 |
| Brain-1 | 19.1 |
| Eye | 18.3 |
| fetal fibroblast | 94.5 |
| venom gland-2 | 27.4 |
| Brain-2 | 19.6 |
| Spleen | 11.2 |
| Lung | 14.6 |
| Liver | 13.7 |
| Kidney | 21.9 |
| Pancreas | 13.9 |
| Small intestine | 14.0 |
| Large intestine | 13.6 |
| Stomach | 15.1 |
| heart | 22.5 |
| ovary | 30.8 |
| cheek muscle | 32.3 |
Transcript
| Transcript ID | habu1_s499_g02322.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02322.t1 aggcgccgaggtgcagcccgaccgccggccccgccatgccctacgccaaccagcccacggtgcgcatcacggagctgagc gacgacaacgtcaagttcatcatcgagaacaccgacctggcagtcgcaaattccatcaggagagtattcatagcagaagt tcccattatagctatagactgggttcagattgacgccaattcgtcagtgctgcacgatgagttcattgcacacaggttgg gtctgatcccacttaccagtgacggtgtggttgataagctgcaatattccagggactgcaactgtgatgagttttgtccc gattgttcggtggagttctctctcgatgtccggtgcaacgaagaccagacccggcatgtcacatctcgggatttgatctc caacaactcccaagttataccggtgacatccaggagaagggacaatgatcccaatgactacgttgaaccagatgacatcc tgattgtcaagctacgcaaaggccaagagctaaggctccgggcctatgctacgaagggctttggtaaggagcatgccaag tggaaccccacagcaggtgtagcctttgagtacgatccagacaacgccctgcgtcatacagtctaccccaagcctgagga atggccaaagagcgaatattctgaaattgatgaagatgaagcccaggctgcctatgaccctaacgggaagccagaaaggt tttactacaatgtggaatcctgtggttctctgcgtcctgagaccattgtgctctcggccttatcaggcctgaagaagaag ctgagcgatctccaaactcagttgagtcaagtgatccagaatgaagtgttgaccataaactgatgttagttaactgcttg gaacaaccctggtttctgggaatgataaaagcagccgagatcagaagcgggcctaatttgatcagcgggaactctgcctc caaatccgatacccattggtgttttttctcttgctaactttgggtcaaaacagtgtgttgtttgttctgaatcagtattt gtcaacctcagccattttaaaatatgtggacttcaaatcccagaatttcctggccaccataatgcatagactttaactcc catgttggttgaggaatgctgggagttgaggtccatacatcttaaagttggtgaagttgagaaacactccttctaaattg ccctcagcattctctaacaaaatattggccgtagatcagagatgtccagccttggcatatttaaggcttgtggacttcaa ctcccagaattctccagccagccatgctgattgggaattctgggagttgaggtccacaggtcttaaagtagccaaggttg gacaccctcttgagaataaaaccaccaaccttatctctcgtt |
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| Transcript ID | habu1_s499_g02322.t2 |
| Definition | - |
>habu1_s499_g02322.t2 gcccggccggccccgcagaaggaagcggcgaggcgccgaggtgcagcccgaccgccggccccgccatgccctacgccaac cagcccacggtgcgcatcacggagctgagcgacgacaacgtcaagttcatcatcgagaacaccgacctggcagtcgcaaa ttccatcaggagagtattcatagcagaagttcccattatagctatagactgggttcagattgacgccaattcgtcagtgc tgcacgatgagttcattgcacacaggttgggtctgatcccacttaccagtgacggtgtggttgataagctgcaatattcc agggactgcaactgtgatgagttttgtcccgattgttcggtggagttctctctcgatgtccggtgcaacgaagaccagac ccggcatgtcacatctcgggatttgatctccaacaactcccaagttataccggtgacatccaggagaagggacaatgatc ccaatgactacgttgaaccagatgacatcctgattgtcaagctacgcaaaggccaagagctaaggctccgggcctatgct acgaagggctttggtaaggagcatgccaagtggaaccccacagcaggtgtagcctttgagtacgatccagacaacgccct gcgtcatacagtctaccccaagcctgaggaatggccaaagagcgaatattctgaaattgatgaagatgaagcccaggctg cctatgaccctaacgggaagccagaaaggttttactacaatgtggaatcctgtggttctctgcgtcctgagaccattgtg ctctcggccttatcaggcctgaagaagaagctgagcgatctccaaactcactcagaacatgctccagagtttgacagtat ctgtacaaagatgtggaatttcttccctatcaaatactcctttttaaaaaaatggattcctttcctcagcctgtttgttt tatggatcaggatccattgcaggagcaagaaccacctgagaacgggaaagaataaatgtcactggtcgaaaggatcacaa accacacctggctgggctgagagagatggagtgctccaaatttacccagctggctttcatgcctaaggtggaaacatttc cgtgcaaagcattatgttttaaccattcacccttcatattttctaaaataccaatgagacatctttctaaatttgagggt agagctaaaaccttgttttgaagaataacagcctttttttgtatattaataataataaaaaccagccttagggtttcaag g |
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Protein
| Protein ID | habu1_s499_g02322.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02322.t1 MPYANQPTVRITELSDDNVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDGVVD KLQYSRDCNCDEFCPDCSVEFSLDVRCNEDQTRHVTSRDLISNNSQVIPVTSRRRDNDPNDYVEPDDILIVKLRKGQELR LRAYATKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAAYDPNGKPERFYYNVESCGSLR PETIVLSALSGLKKKLSDLQTQLSQVIQNEVLTIN |
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| Protein ID | habu1_s499_g02322.t2 |
| Definition | - |
>habu1_s499_g02322.t2 MPYANQPTVRITELSDDNVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDGVVD KLQYSRDCNCDEFCPDCSVEFSLDVRCNEDQTRHVTSRDLISNNSQVIPVTSRRRDNDPNDYVEPDDILIVKLRKGQELR LRAYATKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAAYDPNGKPERFYYNVESCGSLR PETIVLSALSGLKKKLSDLQTHSEHAPEFDSICTKMWNFFPIKYSFLKKWIPFLSLFVLWIRIHCRSKNHLRTGKNKCHW SKGSQTTPGWAERDGVLQIYPAGFHA |
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