Gene
| Gene Model ID | habu1_s499_g02325 |
|---|---|
| Locus | habu1_scaffold499 : 1242242 ... 1250521 : + |
| To GenomeBrowser | habu1_scaffold499:1242242..1250521 |
| Genes list of scaffold | habu1_scaffold499 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cleavage and polyadenylation specificity factor subunit 5 | GO:0000118 GO:0003729 GO:0005813 GO:0005849 GO:0006378 GO:0006379 GO:0016787 GO:0017091 GO:0042382 GO:0042803 GO:0042826 GO:0051262 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s499_g02325.t1 | 1 | 1 | NUDIX_2 | 36 | 222 | 0.0 | 275.5 | 0.0 | 0.0 | 275.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s499_g02325.t1 | gi|602649048|ref|XP_007430935.1| | PREDICTED: cleavage and polyadenylation specificity factor subunit 5 [Python bivittatus] | 0.0 |
| habu1_s499_g02325.t1 | gi|13386106|ref|NP_080899.1| | cleavage and polyadenylation specificity factor subunit 5 [Mus musculus] | 0.0 |
| habu1_s499_g02325.t1 | gi|556984274|ref|XP_005998086.1| | PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like isoform X2 [Latimeria chalumnae] | 0.0 |
| habu1_s499_g02325.t1 | gi|346716318|ref|NP_001231176.1| | cleavage and polyadenylation specificity factor subunit 5 [Sus scrofa] | 0.0 |
| habu1_s499_g02325.t1 | gi|74138675|dbj|BAE27154.1| | unnamed protein product [Mus musculus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 21.1 |
| Venom grand-1 | 36.9 |
| Pit, infrared sensing | 26.7 |
| Nose | 24.9 |
| Brain-1 | 16.0 |
| Eye | 20.6 |
| fetal fibroblast | 71.5 |
| venom gland-2 | 39.4 |
| Brain-2 | 19.9 |
| Spleen | 28.0 |
| Lung | 25.4 |
| Liver | 44.4 |
| Kidney | 31.2 |
| Pancreas | 37.6 |
| Small intestine | 32.5 |
| Large intestine | 26.4 |
| Stomach | 29.3 |
| heart | 31.5 |
| ovary | 53.6 |
| cheek muscle | 25.0 |
Transcript
| Transcript ID | habu1_s499_g02325.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02325.t1 ggccggggaatgctggtggccttgtgagccggcccgcttccgccatgtccgtcgtgccgcccaaccgctcccagaccggc tggccccgcggggtcaaccagttcgggaacaaatacatccagcaaagcaagcccctcaccctcgagcggaccatcaacct gtacccactgacaaattatacctttgggaccaaggaacccctctacgagaaggacagttcggtagccgcccgattccagc gcatgagggaagaatttgacaagattgggatgaggcggaccgttgagggggtcctcattgtgcacgaacatagattgcct cacgtgctgctcttgcagttgggcacaaccttcttcaaactgccaggtggtgaacttaatccaggagaagatgaggtaga aggtcttaaacgtttaatgacagagatactaggtcgtcaagatggcgtccttcaagactgggtcattgatgactgcattg gtaactggtggcgaccgaattttgagcccccccagtacccttatattccagctcatattacaaaaccaaaagagcacaag aagctctttttggttcagctccaagaaaaagctttgtttgcggtccccaaaaactacaagctagtagctgctcccttatt tgagctttatgacaacgcgccaggctacggtcctatcatttccagccttccgcaacttttgagcaggttcaattttattt acaactgaatttcctgaagtgtgagtagaagccgtctctgtgagaacagctttaaaatgtagaagagaaaatgtgacgca aggattttttttttatgtctttctctttctctctctctctttctctcccctttgagtttttcccctccccaactttctac tctctgaataggaaagtgaatcttgactgtttagacagtggaataagaactgtaattgcattttaatcacttatgttgtg atagtcacctgatttttttttaaataacattaaacaaaaatggactcagttgtgcg |
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Protein
| Protein ID | habu1_s499_g02325.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02325.t1 MSVVPPNRSQTGWPRGVNQFGNKYIQQSKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTV EGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPY IPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN |
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