Gene
| Gene Model ID | habu1_s499_g02326 |
|---|---|
| Locus | habu1_scaffold499 : 1253012 ... 1271934 : + |
| To GenomeBrowser | habu1_scaffold499:1253012..1271934 |
| Genes list of scaffold | habu1_scaffold499 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase amfr | EC:6.3.2.19 GO:0000209 GO:0000836 GO:0004842 GO:0004872 GO:0008270 GO:0016874 GO:0030176 GO:0030433 GO:0030968 GO:0048471 GO:0051259 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s499_g02326.t1 | 1 | 1 | zf-rbx1 | 221 | 267 | 3.4e-07 | 30.2 | 6.9e-10 | 7.4e-07 | 29.1 |
| habu1_s499_g02326.t1 | 1 | 1 | zf-C3HC4_3 | 226 | 269 | 3.6e-09 | 36.1 | 8.0e-12 | 8.5e-09 | 34.9 |
| habu1_s499_g02326.t1 | 1 | 1 | zf-RING_2 | 227 | 267 | 7.6e-15 | 54.4 | 7.2e-18 | 7.6e-15 | 54.4 |
| habu1_s499_g02326.t1 | 1 | 1 | zf-C3HC4_2 | 229 | 266 | 7.7e-09 | 35.4 | 1.7e-11 | 1.8e-08 | 34.2 |
| habu1_s499_g02326.t1 | 1 | 1 | zf-C3HC4 | 229 | 266 | 3.7e-08 | 32.8 | 6.3e-11 | 6.6e-08 | 32.0 |
| habu1_s499_g02326.t1 | 1 | 1 | zf-RING_5 | 229 | 267 | 2.1e-06 | 27.3 | 4.0e-09 | 4.2e-06 | 26.3 |
| habu1_s499_g02326.t1 | 1 | 1 | CUE | 346 | 385 | 3.4e-10 | 39.1 | 6.8e-13 | 7.2e-10 | 38.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s499_g02326.t1 | gi|602649050|ref|XP_007430936.1| | PREDICTED: E3 ubiquitin-protein ligase AMFR [Python bivittatus] | 0.0 |
| habu1_s499_g02326.t1 | gi|705699234|ref|XP_010125237.1| | PREDICTED: E3 ubiquitin-protein ligase AMFR [Chlamydotis macqueenii] | 0.0 |
| habu1_s499_g02326.t1 | gi|637362565|ref|XP_008120506.1| | PREDICTED: E3 ubiquitin-protein ligase AMFR [Anolis carolinensis] | 0.0 |
| habu1_s499_g02326.t1 | gi|530639056|ref|XP_005306327.1| | PREDICTED: E3 ubiquitin-protein ligase AMFR isoform X3 [Chrysemys picta bellii] | 0.0 |
| habu1_s499_g02326.t1 | gi|700344079|ref|XP_009915933.1| | PREDICTED: E3 ubiquitin-protein ligase AMFR isoform X3 [Haliaeetus albicilla] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 17.7 |
| Venom grand-1 | 29.9 |
| Pit, infrared sensing | 13.9 |
| Nose | 13.5 |
| Brain-1 | 20.2 |
| Eye | 17.3 |
| fetal fibroblast | 27.7 |
| venom gland-2 | 24.4 |
| Brain-2 | 17.4 |
| Spleen | 11.1 |
| Lung | 17.6 |
| Liver | 27.6 |
| Kidney | 24.3 |
| Pancreas | 14.1 |
| Small intestine | 23.1 |
| Large intestine | 11.3 |
| Stomach | 10.2 |
| heart | 10.0 |
| ovary | 30.6 |
| cheek muscle | 59.7 |
Transcript
| Transcript ID | habu1_s499_g02326.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02326.t1 aaacggggcaaacctcccttaacctccgtctcgcttagcgacagacatgttgagctccgttgtggccctagggaagaagg acactgccggtctccctcacgtgtccaaacagacttgagaatcgccccctccccaataccggtgctggtgaatacagcct gttgcattctgatgttgattgcaaagctaatacagaccattgtttttggtcccctccgtgttagtgaaaggcagcatctc aaggacaagttttggaactttatcttctacaagtttatttttatttttggggtgttaaatgtccagaccgtagatgaagt ggtcatgtggtgtctctggttttctggacttgtcttcttacatctcatggtccagctgtgcaaagacaggtttgaatatc tgtctttttcgcccaccacgccgttgaacagccacattcgagtcctgacgctgctggttgtcatgttgctttcctgctgt ggcctcgcggtggtgtgcggcgtcatcggctacgcccacggcatgcacacgctctccttcatgactgcggagtccctgct tgtcaccgtaagaaccgtgcacgtgattttacgttacatcattcatctctgggatctgaatcatgaaggcacctgggaga gcaaaggcacctacgtttattacaccgatttcatcatggagctgatgctgctgtccctggatttgatgcatcacattcat atgctgctgcgctacctgttccatgaagttcagcgcagactgcggcgccataagaattacctgcgggtggttggaaacat ggaagcaaggtttgcggtggcaactcctgaagaattggcctccaacaacgatgactgcgctatttgctgggattccatgc aggccgcccggaagctcccttgcggccacctcttccataactcatgcctgcgctcctggctcgagcaggacacctcctgc ccgacctgtaggatgtccctgaacattgcagaccaccagcaggctccagaggatcaccagagggagaacctggatgaaaa cctgccccctgtggcagcagccgaaggaaggcctcacctcaaccagcacaatcacttcttccacttcgatgggtctcgca tcgctagctggctcccaagcttttcggtcgaggtgatgcacaccacaaacatccttgggatcgctcaggccagcaactct cagctcaacgccatggcccatcagatccaggagatgttcccccaggttccttaccacctcgttctccaggacctgcagct gacccgctcggtagaaataacaaccgacaatattttagagggacgcatccaggtgcctttcccaacacagcgttctgaca gtatccgaccagctttgaacagtcctgtagaaaggcagagtaccgatcaagaagaagctgaagaggacatggagatggca aggatcccacttgagctcagctccaggctggaagacacggcggcatttaatgaagccgaagcggaagctgccgagacgga ggacttcgaggtgagaggcagccgtttctccaagtcggctgacgagaggcagaggatgctgcttcagaggaaggaggagc tgttgcaacaagcacgcaggcgctaccttgacaaaagctctgacgatcccatcccggacttctcctcccaggctgaagga gcagcctccgactccctcactttgcgacgcaggatgttggccgccgccgccgagcggagattacagaaacagcatccctc ctaacgcttccggcctgctgttccttccccatcggtagcctagataatcacccctcg |
|
Protein
| Protein ID | habu1_s499_g02326.t1 |
|---|---|
| Definition | - |
>habu1_s499_g02326.t1 MLIAKLIQTIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVDEVVMWCLWFSGLVFLHLMVQLCKDRFEYLSFS PTTPLNSHIRVLTLLVVMLLSCCGLAVVCGVIGYAHGMHTLSFMTAESLLVTVRTVHVILRYIIHLWDLNHEGTWESKGT YVYYTDFIMELMLLSLDLMHHIHMLLRYLFHEVQRRLRRHKNYLRVVGNMEARFAVATPEELASNNDDCAICWDSMQAAR KLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADHQQAPEDHQRENLDENLPPVAAAEGRPHLNQHNHFFHFDGSRIASW LPSFSVEVMHTTNILGIAQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPTQRSDSIRP ALNSPVERQSTDQEEAEEDMEMARIPLELSSRLEDTAAFNEAEAEAAETEDFEVRGSRFSKSADERQRMLLQRKEELLQQ ARRRYLDKSSDDPIPDFSSQAEGAASDSLTLRRRMLAAAAERRLQKQHPS |
|