Gene
| Gene Model ID | habu1_s5179_g15340 |
|---|---|
| Locus | habu1_scaffold5179 : 517841 ... 534714 : - |
| To GenomeBrowser | habu1_scaffold5179:517841..534714 |
| Genes list of scaffold | habu1_scaffold5179 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5179_g15340.t1 | 1 | 1 | RVT_1 | 34 | 194 | 1.1e-23 | 83.7 | 8.2e-27 | 2.0e-23 | 82.8 |
| habu1_s5179_g15340.t1 | 6 | 1 | WD40 | 227 | 254 | 0.0 | 162.4 | 1.7e-07 | 0.00043 | 20.0 |
| habu1_s5179_g15340.t1 | 6 | 2 | WD40 | 259 | 294 | 0.0 | 162.4 | 1.9e-13 | 4.7e-10 | 38.9 |
| habu1_s5179_g15340.t1 | 6 | 3 | WD40 | 298 | 334 | 0.0 | 162.4 | 3.9e-09 | 9.6e-06 | 25.2 |
| habu1_s5179_g15340.t1 | 6 | 4 | WD40 | 345 | 375 | 0.0 | 162.4 | 3.8e-09 | 9.4e-06 | 25.3 |
| habu1_s5179_g15340.t1 | 6 | 5 | WD40 | 408 | 443 | 0.0 | 162.4 | 8.1e-13 | 2.0e-09 | 36.9 |
| habu1_s5179_g15340.t1 | 6 | 6 | WD40 | 458 | 492 | 0.0 | 162.4 | 2.3e-08 | 5.8e-05 | 22.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5179_g15340.t1 | gi|700436469|ref|XP_009957289.1| | PREDICTED: F-box/WD repeat-containing protein 11, partial [Leptosomus discolor] | 0.0 |
| habu1_s5179_g15340.t1 | gi|602660053|ref|XP_007435711.1| | PREDICTED: F-box/WD repeat-containing protein 11-like isoform X2 [Python bivittatus] | 0.0 |
| habu1_s5179_g15340.t1 | gi|602660051|ref|XP_007435710.1| | PREDICTED: F-box/WD repeat-containing protein 11-like isoform X1 [Python bivittatus] | 0.0 |
| habu1_s5179_g15340.t1 | gi|562838427|ref|XP_006148410.1| | PREDICTED: F-box/WD repeat-containing protein 11-like [Tupaia chinensis] | 0.0 |
| habu1_s5179_g15340.t1 | gi|504150176|ref|XP_004587483.1| | PREDICTED: F-box/WD repeat-containing protein 11 isoform X2 [Ochotona princeps] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.4 |
| Venom grand-1 | 5.8 |
| Pit, infrared sensing | 5.9 |
| Nose | 5.3 |
| Brain-1 | 8.7 |
| Eye | 5.1 |
| fetal fibroblast | 9.9 |
| venom gland-2 | 6.2 |
| Brain-2 | 9.2 |
| Spleen | 5.3 |
| Lung | 6.7 |
| Liver | 7.4 |
| Kidney | 10.9 |
| Pancreas | 9.0 |
| Small intestine | 7.1 |
| Large intestine | 4.3 |
| Stomach | 6.5 |
| heart | 4.9 |
| ovary | 23.2 |
| cheek muscle | 12.8 |
Transcript
| Transcript ID | habu1_s5179_g15340.t1 |
|---|---|
| Definition | - |
>habu1_s5179_g15340.t1 aaacgccctgagcccaacctaaaagacattttgggtcgggcttcccccaacactgagcaatgtccttcggatgctgcact cagacctccacggcatttgatactggcggcacgcttgatcctccctgggaagccacagtgtctgcaccagtgctctttgt aaaaaagaagcccagagaattgaggctttgctgtgactatcgaaaattaaatgccattacggtaggtaatcgatacccgc tgcccctcatccccgaacttctggaatggctccgggaggcaaaaatcttcacgaaattggacttgagtggaacctacaat ctcgttaggattcggtcgggtgatgagtggaagacagcgtttggcacctggtgcgggcacttcaagtatacagtgatgcc atttgggctgaccaatgcccctgcagtttttcaacacttcatgaacgacatattccgggatctgttagatcagtttgtcg tgatctatttggatgacattctgatctattccctttcgcgggagatgcaccaccagcatctccatcacatcctgcaatgg ctccgagatcatcgtttgtatgccaaactggagaaatgccaattctatcaaatgaccattgatttcctaggtcatcgcat ttctcctgagggcattgccatggagccgagcaagacaatagaatctaactggcgatgtggaaggcacaacttgcaaagaa ttcagtgccgctctgaaaatagtaaaggtgtttactgtttacaatatgacgatgagaagattataagcggcctaagggat aactccattaagatatgggataaaaccggattggaatgtttgaaagtattaacaggacatactggctccgttctttgtct acagtatgatgaaagagtaattgtaactggatcgtctgactctactgtcagagtctgggatgtgaatacaggcgaagtct tgaacactttaattcatcacaatgaagcagtgcttcacttgcgctttagtaatggcttaatggtgacctgttcaaaggac cgctctattgctgtttgggacatggcttcagcaactgacatcactttgcgccgagtattagttggccatcgggctgctgt taatgttgtggactttgatgataaatatattgtatctgcttctggagataggaccattaaagtaattcctacatgcttcc ctagatgtccacccttatgctaccataaatccttggccgccttactgaaaaatcttagactttgggacattgaatgtgga gcatgtttaagagtgctagaaggacatgaagagctggttagatgtatacgatttgataacaaaaggattgtaagcggagc ttatgatggcaaaatcaaagtttgggacctgcaagctgctcttgatccacgagctccagcaagtacactatgcttacgta cattggtggaacactctggacgcgtttttagactccaatttgatgaatttcaaattattagtagttcccacgatgacacc attttgatttgggattttttaaatgtgcctcccaatgcacaaaatgaaacccgctctccatccagaacgtacacctacat ctccagataacactctgtaatttacggttctccaagggattctacagtctttgaactacgggacatttggctatcacaca tctgaagacaatagccgcagctaaagttggaagtggttttaggtgctgtgtagatgtaaagcagcacaattctttctctc aatgtaactttttccagtcctcctccactcagtggtctcttaaggaattgactaggaattcactgagttcagcccctccc tcacctcagtgcaagatccaaagcttcatgagtaaattgcccatatacactgaaccca |
|
Protein
| Protein ID | habu1_s5179_g15340.t1 |
|---|---|
| Definition | - |
>habu1_s5179_g15340.t1 MSFGCCTQTSTAFDTGGTLDPPWEATVSAPVLFVKKKPRELRLCCDYRKLNAITVGNRYPLPLIPELLEWLREAKIFTKL DLSGTYNLVRIRSGDEWKTAFGTWCGHFKYTVMPFGLTNAPAVFQHFMNDIFRDLLDQFVVIYLDDILIYSLSREMHHQH LHHILQWLRDHRLYAKLEKCQFYQMTIDFLGHRISPEGIAMEPSKTIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEK IISGLRDNSIKIWDKTGLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGL MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVIPTCFPRCPPLCYHKSLAALLKNLR LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQII SSSHDDTILIWDFLNVPPNAQNETRSPSRTYTYISR |
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