Gene
| Gene Model ID | habu1_s5179_g15343 |
|---|---|
| Locus | habu1_scaffold5179 : 619374 ... 642094 : - |
| To GenomeBrowser | habu1_scaffold5179:619374..642094 |
| Genes list of scaffold | habu1_scaffold5179 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic peptide chain release factor subunit 1 | GO:0000184 GO:0005515 GO:0005634 GO:0005829 GO:0005840 GO:0006444 GO:0006449 GO:0006479 GO:0016032 GO:0016149 GO:0018444 GO:0043022 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5179_g15343.t1 | 1 | 1 | eRF1_1 | 9 | 139 | 1.0e-28 | 99.5 | 5.2e-32 | 1.9e-28 | 98.6 |
| habu1_s5179_g15343.t1 | 1 | 1 | eRF1_2 | 145 | 277 | 1.4013e-45 | 155.0 | 0.0 | 1.4013e-45 | 154.3 |
| habu1_s5179_g15343.t1 | 1 | 1 | eRF1_3 | 280 | 417 | 4.0e-39 | 133.3 | 2.40042e-42 | 8.8e-39 | 132.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5179_g15343.t1 | gi|637250905|ref|XP_003215303.2| | PREDICTED: eukaryotic peptide chain release factor subunit 1 [Anolis carolinensis] | 0.0 |
| habu1_s5179_g15343.t1 | gi|4759034|ref|NP_004721.1| | eukaryotic peptide chain release factor subunit 1 isoform 1 [Homo sapiens] | 0.0 |
| habu1_s5179_g15343.t1 | gi|564245667|ref|XP_006261954.1| | PREDICTED: eukaryotic peptide chain release factor subunit 1-like [Alligator mississippiensis] | 0.0 |
| habu1_s5179_g15343.t1 | gi|558115144|ref|XP_006086591.1| | PREDICTED: eukaryotic peptide chain release factor subunit 1 [Myotis lucifugus] | 0.0 |
| habu1_s5179_g15343.t1 | gi|556753049|ref|XP_005971907.1| | PREDICTED: eukaryotic peptide chain release factor subunit 1 [Pantholops hodgsonii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 31.0 |
| Venom grand-1 | 48.2 |
| Pit, infrared sensing | 33.3 |
| Nose | 34.0 |
| Brain-1 | 24.4 |
| Eye | 31.6 |
| fetal fibroblast | 136.0 |
| venom gland-2 | 127.4 |
| Brain-2 | 31.5 |
| Spleen | 33.5 |
| Lung | 34.8 |
| Liver | 40.8 |
| Kidney | 73.2 |
| Pancreas | 46.5 |
| Small intestine | 42.8 |
| Large intestine | 40.7 |
| Stomach | 57.2 |
| heart | 59.6 |
| ovary | 95.7 |
| cheek muscle | 134.1 |
Transcript
| Transcript ID | habu1_s5179_g15343.t1 |
|---|---|
| Definition | - |
>habu1_s5179_g15343.t1 ggcttgattacacccgcaggaggggcggtggaggaggaggaggaagaggaggaggaggagggagaagatggcggacgatc ccagcgctgccgacaggaacgtggagatctggaagatcaagaagctcatcaagagcctcgaggcggcgcgcggcaacggc accagcatgatatccttgatcattccccccaaagaccagatttcccgagtggcaaaaatgttagctgatgagtttggcac agcatcaaatattaaatctcgagtgaatcgtctttcagtccttggcgccattacttctgtacagcaacggctaaaactat ataacaaagtacctccaaatggtctggttgtttactgtggaacaattgtgacagaagaaggaaaggagaagaaagtgaac attgactttgaacctttcaaaccaataaatacatccttgtatttgtgtgataataaatttcatacagaggccctaacagc actattgtcagatgatagcaaattcggcttcattgtaatagatggtagtggtgcactttttggaacgcttcaaggaaaca ccagagaggtgctgcacaaattcacagtggatcttccaaagaagcacgggagaggaggccagtctgccttgcgttttgct cgtttgagaatggaaaaacgtcacaactatgtaaggaaagtagcagaaactgctgtgcagctgtttatttctggtgacaa ggtgaatgtggctggtcttgtgttagctgggtcagctgatttcaaaactgaattaagtcaatcagatatgtttgatcaga ggttgcagtccaaagtattaaagctagttgacatctcatatggtggtgaaaatggattcaatcaagcaattgaattgtcc actgaggtcctgtctaatgtgaaattcattcaagaaaagaagctaatagggcgatactttgacgaaatcagtcaggacac aggaaaatactgttttggggttgaagatactctaaaagccttagaaatgggagcagtagaaatcctgatagtttatgaga acctggatataatgagatatgtacttcattgccaaggcacggaagaagagaagattctctatttgacaccagaacaagaa aaagataaatcccacttcacagataaagagacgggacaggagcacgaactaatagaaagcatgcctctgcttgagtggtt tgcaaacaactacaagaaatttggagccacgttggaaattgtgacagacaagtcgcaggaaggatcccagtttgtgaaag gatttggagggattggaggtatcttgcggtaccgagtggacttccagggaatggaataccaaggaggagatgatgaattt tttgaccttgatgactactaggtagtcggcctgggtctggcaaatgtgcctcacccctccagcatccaacccaaggagaa aactcatgatggaaaacaaaacagatccctgccttagaattggagtatttccagaactttatccagaacatcggttttca aaaaaagaaagagaaagaaagcaaaccctactgatttgtcatagtgtcagtacagcagcactctactagatttctataat gccatttggactaattaaaaaaagaatcccagtttttacttttacttaatggtgaaattggttgctcttgtattttatga aaatgatttttttaaccttcagctacattaactgctctcaaccttcatttgaaacaaagtaattatactggtttgtttct tactttgataggaggaaatttattgctgctttttgcagtgatacgacccatttacatggcgttcttggcttagactgcag aagaaccatcttagggagaccttgttcctattgttcccagtctacagtggtggaagtaaaaggaattaaactctctgctg tgccagctttgaaaggtgtgactttaaaattgggaggtccacctatttcattcttagactgcaaaaacactgtttgtata aatcaggaagtgtgtttcattaaagaaaattgaagtgccagggtctcagcaggcttaaccgggattatgagttgtgtggc cttcacttttcccttttgtcagtcaataaacagtttccacaagcaagctaat |
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Protein
| Protein ID | habu1_s5179_g15343.t1 |
|---|---|
| Definition | - |
>habu1_s5179_g15343.t1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQ RLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGT LQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEIL IVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGS QFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY |
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