Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s5195_g15363
Locus habu1_scaffold5195 : 875322 ... 892769 : -
To GenomeBrowser habu1_scaffold5195:875322..892769
Genes list of scaffold habu1_scaffold5195

Annotation by Blast2GO
Annotation GO
crooked neck-like protein 1 GO:0000245 GO:0044822 GO:0071013

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s5195_g15363.t1 2 1 Suf 83 215 9.0e-13 48.5 1.5e-08 1.5e-05 24.8
habu1_s5195_g15363.t1 3 1 HAT 94 124 9.30042e-42 140.4 2.9e-11 2.8e-08 33.3
habu1_s5195_g15363.t1 3 2 HAT 195 226 9.30042e-42 140.4 1.0e-23 1.0e-20 73.1
habu1_s5195_g15363.t1 2 2 Suf 233 318 9.0e-13 48.5 8.6e-08 8.5e-05 22.4
habu1_s5195_g15363.t1 1 1 TPR_16 452 505 1.6e-14 54.1 6.8e-06 0.0067 17.0
habu1_s5195_g15363.t1 3 3 HAT 458 488 9.30042e-42 140.4 2.6e-07 0.00026 20.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s5195_g15363.t1 gi|602640054|ref|XP_007426844.1| PREDICTED: crooked neck-like protein 1 [Python bivittatus] 0.0
habu1_s5195_g15363.t1 gi|637292152|ref|XP_008107293.1| PREDICTED: crooked neck-like protein 1 isoform X1 [Anolis carolinensis] 0.0
habu1_s5195_g15363.t1 gi|719743996|ref|XP_010210617.1| PREDICTED: crooked neck-like protein 1 [Tinamus guttatus] 0.0
habu1_s5195_g15363.t1 gi|641752700|ref|XP_008172233.1| PREDICTED: crooked neck-like protein 1 [Chrysemys picta bellii] 0.0
habu1_s5195_g15363.t1 gi|564253919|ref|XP_006265956.1| PREDICTED: crooked neck-like protein 1 [Alligator mississippiensis] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 7.9
Venom grand-1 7.3
Pit, infrared sensing 8.6
Nose 9.9
Brain-1 7.1
Eye 8.2
fetal fibroblast 15.9
venom gland-2 11.9
Brain-2 7.2
Spleen 9.1
Lung 9.8
Liver 12.3
Kidney 8.1
Pancreas 8.9
Small intestine 9.5
Large intestine 9.1
Stomach 8.7
heart 9.6
ovary 21.1
cheek muscle 11.3

Transcript
Transcript IDhabu1_s5195_g15363.t1
Definition-
>habu1_s5195_g15363.t1
gctgggaggtcaaagttcaaactgaagaggaggaggaggaggaggaaaaggcggcgtagactaatagaacgggcggaaag
atggcgtccacggcggctgggaagcagcgaattcccaaagtggcaaaggtgaaaaataaagctccagcagaagtacagat
aacagcagaacaattgttaagagaagcaaaggagagagaactcgagcttcttcccccacctcctcaacagaaaatcacag
atgaagaggagctaaatgattacaagcttcggaaaagaaagacttttgaagataacataaggaaaaaccggactgttatt
agtaattggatcaaatacgcacaatgggaagaaagcctcaaagaaatacaaagggctcgttccatctacgagcgtgctct
agatgtggattaccgaaatgtaactctttggctgaagtatgccgaaatggaaatgaagaatcgtcaggttaatcatgcgc
gaaatatctgggatcgggctatcactattttaccaagagttaatcagttctggtacaaatatacttacatggaagagatg
ctggggaatgttgccggggcccgccaggtgtttgagcgttggatggaatggcagccagaggaacagtcgtggcattccta
tattaactttgagctaagatacaaggaagtggatagagcacgttccatttatgagagatttgtcatggtccatcctgatg
ttaagaattggatcaaatatgctcgttttgaagagaaacatagttattttgtacatgcaaggaaagtatttgaaagagct
gtggaattctttggagaagaacatatgaatgaatatttgtatgttgcatttgccaaatttgaagagaaccagaaagagtt
tgaacgggtgcgagtaatattcaaatatgccctggacagaattccaaaacatgaggcacaggagctcttcaaaaattata
caatttttgagaagaaatttggggaccgaaggggaattgaggatattattgttagcaagaggagattccaatatgaagaa
gaagtaaaagctaatccacataattatgatgcttggtttgactatctgcgtctggtggagagtgatgcagaatctgatac
aatacgtgaagtttatgaaagagccattgccaacgttcctccaattcaagaaaaacgacactggaagaggtacatctatc
tgtggatcaattatgcactttatgaagagctagaggcaaaggatccagagagaacaagacaggtgtatcaagcatgtgtt
gaactcattcctcacaaaaagtttacatttgccaaaatatggttgctctacgcacagtttgaaattagacagaagcatct
ccatcttgccaggcgagcattggggacatctataggtaaatgtccaaagaacaaactatttaaaggctatattgaattgg
agctacaactgcgagagtttgatcgttgtcggaaactgtatgagaaatttttagaatttgcacctgaaaactgcacatca
tggatcaaatttgccgagttagaaactattctaggtgacattgatcgagccagagctatatatgaactagctattggcca
gcctcgattggatatgcccgaggtgctttggaaatcttacatagactttgaaattgaacaagaggaatatgagaatacaa
gaaatttatacaggaggttgcttcagcgaacacagcatgttaaggtatggatcagttttgctcaatttgagctctcagca
gataaaaggaacaatttaccacgatgccggcaaatatatgaagaggcaaataaaacaatgagaaattgtgaggagaaaga
agagaggcttatgctcttggaatcttggaaaaactttgaagaggagtttggaacagaatccagcagagaacgagtagaca
aactgatgcctgaaaaagtcaagaagcggagaaaacttcaggctgaagatgggtctgatgccggctgggaagaatattat
gattatatcttcccagaagatgctgccaatcaacccaacctcaaactgcttgcaatggctaaactctggaagaaggagca
acaggatgaaaatccagagacagacccagacaaggatattgatgaaagcagtccctaacaatatctttgatttcttctct
tttatattgtacagatttttgctaataaactatttccccccaaaaattgct

Protein
Protein IDhabu1_s5195_g15363.t1
Definition-
>habu1_s5195_g15363.t1
MASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVI
SNWIKYAQWEESLKEIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYMEEM
LGNVAGARQVFERWMEWQPEEQSWHSYINFELRYKEVDRARSIYERFVMVHPDVKNWIKYARFEEKHSYFVHARKVFERA
VEFFGEEHMNEYLYVAFAKFEENQKEFERVRVIFKYALDRIPKHEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEE
EVKANPHNYDAWFDYLRLVESDAESDTIREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQACV
ELIPHKKFTFAKIWLLYAQFEIRQKHLHLARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTS
WIKFAELETILGDIDRARAIYELAIGQPRLDMPEVLWKSYIDFEIEQEEYENTRNLYRRLLQRTQHVKVWISFAQFELSA
DKRNNLPRCRQIYEEANKTMRNCEEKEERLMLLESWKNFEEEFGTESSRERVDKLMPEKVKKRRKLQAEDGSDAGWEEYY
DYIFPEDAANQPNLKLLAMAKLWKKEQQDENPETDPDKDIDESSP

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