Gene
Gene Model ID | habu1_s5205_g15383 |
---|---|
Locus | habu1_scaffold5205 : 225986 ... 357729 : + |
To GenomeBrowser | habu1_scaffold5205:225986..357729 |
Genes list of scaffold | habu1_scaffold5205 |
Annotation by Blast2GO
Annotation | GO |
---|---|
syntaxin-16 isoform x4 | GO:0005484 GO:0005794 GO:0006886 GO:0006891 GO:0031201 GO:0061025 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s5205_g15383.t1 | 1 | 1 | Syntaxin | 130 | 227 | 3.7e-14 | 52.7 | 3.8e-17 | 3.7e-14 | 52.7 |
habu1_s5205_g15383.t1 | 1 | 1 | SNARE | 290 | 352 | 3.3e-20 | 71.5 | 3.3e-23 | 3.3e-20 | 71.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s5205_g15383.t1 | gi|602651179|ref|XP_007431975.1| | PREDICTED: syntaxin-16 isoform X6 [Python bivittatus] | 0.0 |
habu1_s5205_g15383.t1 | gi|602651177|ref|XP_007431974.1| | PREDICTED: syntaxin-16 isoform X5 [Python bivittatus] | 0.0 |
habu1_s5205_g15383.t1 | gi|602651175|ref|XP_007431973.1| | PREDICTED: syntaxin-16 isoform X4 [Python bivittatus] | 0.0 |
habu1_s5205_g15383.t1 | gi|556969831|ref|XP_005993618.1| | PREDICTED: syntaxin-16 isoform X5 [Latimeria chalumnae] | 0.0 |
habu1_s5205_g15383.t1 | gi|556969828|ref|XP_005993617.1| | PREDICTED: syntaxin-16 isoform X4 [Latimeria chalumnae] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 4.1 |
Venom grand-1 | 3.4 |
Pit, infrared sensing | 4.1 |
Nose | 4.2 |
Brain-1 | 6.8 |
Eye | 5.4 |
fetal fibroblast | 5.8 |
venom gland-2 | 6.9 |
Brain-2 | 7.3 |
Spleen | 4.5 |
Lung | 3.0 |
Liver | 3.2 |
Kidney | 5.0 |
Pancreas | 4.2 |
Small intestine | 4.5 |
Large intestine | 2.9 |
Stomach | 3.4 |
heart | 5.8 |
ovary | 7.5 |
cheek muscle | 5.4 |
Transcript
Transcript ID | habu1_s5205_g15383.t1 |
---|---|
Definition | - |
>habu1_s5205_g15383.t1 gaggactttccctgcccgggagcgccgtgcatgcgtggttccgccccctgcgccggccgaggcgtagctggcaagcggca gagacggagcaggccgaccaccagctggcccagttcaagggaggtcacaggagaagatgatcgcatgagcccaggatatt gcaactgtcataaatatgagtcggtttccaagagtctgaattttgatcgcatggccatggagatgctgcgttggttgacc tctaggaaactttcaggcatggccacccggcgtttaacagacgcgtacttgttgttgcggaacaacgcgatccaaagccg gcagctgctggctgagcaacttgcagatgaccgcatggcactggtatcaggtatcagtttagatcctgaagcagctgtct gtgtatctaagaggttgcctcccaagtggattgatggtatagaagaaattcaatatgagatatccaggataaaacagaag atgaaagaactagccagtttgcatgacaagcatttaaacagaccgactttggatgacagcagtgaggaagaacatgcaat agaaataaccactcaagaaattacacagctatttcacaggtgtcagagagcagtccagggtttgcacaacaagtctcgaa gctgtacaaaccaagagtgccggcttctgaagaacgttgtgtgttccttagctcagtctctacaggacctctccaccagc tttaggcatgggcaatctgactatctcaaacgcatgaaaaatcgagaagaaagatccaaacatttctttgacacctcagt ctccctcatggacgatggggaggatacgacactctacgataggggttttacagatgaccagttagtattagtggaacaaa acactattttggtggaagagcgggaacgagaaattcgacaagttatacagtccattactgatcttaatgaaattttcagg gatttaggagcaatggtagtcgaacagggtactgtactggataggattgactacaatgttgaacaatcatgcataaaaac agaggaaggattgaaacagctacataaagctgagcagtatcaaaagaagaatcggaagatgcttatcattttaattttgt ttgtcatagttattgtccttatcattgtccttattgctgtaaaatttcgctaggcaatgtgccagtgatgtttttctttc tctctgtatttgtctgagaggtagcaacaaatttttgtgtgttgtgtttctcctgtttttgttcctgagaggaatggttg agcctgtgctcttgaaagctgcctgttggacgaatgtacgagatctaatggtgcaaagtctgtgcaatgttcatacagaa aacctgttttacatgttcagtgaatatggaaggcagtgatttgtaaaaaaaaaatgtgtagaaatgtcagaatttctgag aaaagctaccaaatcaggcatttcatttatccaggccactgaaactctagaatgcatttttaaaagtgatttaaacattt tgggaagtgcttttactaaataggaataataatgtgctttctaccatgacgtagcctacggttaattttagggtaagctg tccaaattgtgatgtggacatcattcccaaaactatcgagttggagattttaaataatgccttaaacatacaatatttcc actttaccattctcccctccagagttagtattagtatgggttcacagaaataaaaaagatttctaatttcattctattat tccaaaagtggtggttggcattatcaataatattctaatcgcagggagtattattgttttaagattatttttaagtttta aataatcaggaatgtgctttgattatttccacctcttcccactattgaactgaaagttgtttctctgatccctctttctg aatcttccttctcaaactgaatctgttaatatacagcagcagttacacatttcatcttattgttttcagaatgtgaaggg aaaagggcgtggtacaattcatacacagtttaaattgaactagtgacaatatcaggaacttacatctaaataaaataact tttaagctgtgagatctcaggagaatttggaatcctgttcagccaagagcagatgttgctctgcctcagtattacttgtt tctctaacatagtaggtggctgtgctgaaaaagtttttgtgattaaattatatttatatgctatatttacagttaaatat atatttaactaacttaaaattgcatggcaatttggggcccttggtgttcaatccttttttttttaaagcattctgtactg aagaacttaaaggttgtagtttgcattctctttttgctgtgatttagcaacaccacttgccaactttttttaattgtctt ggattcttatccatttgatcgtgcaataattgcaacgctgctgtgtacttgttacaccttgttttcttcctttcatccag ctctttgcatcgttcagatttcttgtatctgagacagggaaacagaaatcatagctctcccttgggtcaatgggagattc tgcttgctagataaagggagaatcccacatagcatttttatagttgaagcccctttgacgtaaagaggatcgccacaaga gaattgtgttcagctgttgctattattctgtcagtgagaaggtaaagaagtgctcttagtgaactctgctcagctatttt gattcatctcctatctacaggaggctgctttatgccttccgatacagtggaccattgcttcccggaagaatggaattcaa gctctttatattaccatctgcagcaactatcagttgcacagatagatttgtgatttgaacaagttctggcctagccaaat agcagtgaataacaagatacagatagcatgagaaatatggaaagtaaacatactgtattttatgcatgtgcaaaaatcca tttgctccttgtgtatgcataaaatagacaaaaatatgccaagaatgatggttgccagggtctggtctgtattttctaac tggataacaagggctgcctgtatttgctgaaagtatcattctgttacctaaagtagaataccaattatagctgacctttt tcttttcaaaacaagaaaaagctgagcatctgttgacttaagtttctccatgatttggttgaaataaccaatttcagcag gccatgtttaacctctttttgccatgtttgtttattaaaatctttaaccaatttcattagg |
Protein
Protein ID | habu1_s5205_g15383.t1 |
---|---|
Definition | - |
>habu1_s5205_g15383.t1 MRGSAPCAGRGVAGKRQRRSRPTTSWPSSREVTGEDDRMSPGYCNCHKYESVSKSLNFDRMAMEMLRWLTSRKLSGMATR RLTDAYLLLRNNAIQSRQLLAEQLADDRMALVSGISLDPEAAVCVSKRLPPKWIDGIEEIQYEISRIKQKMKELASLHDK HLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQGLHNKSRSCTNQECRLLKNVVCSLAQSLQDLSTSFRHGQSDYLK RMKNREERSKHFFDTSVSLMDDGEDTTLYDRGFTDDQLVLVEQNTILVEEREREIRQVIQSITDLNEIFRDLGAMVVEQG TVLDRIDYNVEQSCIKTEEGLKQLHKAEQYQKKNRKMLIILILFVIVIVLIIVLIAVKFR |