Gene
| Gene Model ID | habu1_s536_g02477 |
|---|---|
| Locus | habu1_scaffold536 : 911305 ... 932445 : + |
| To GenomeBrowser | habu1_scaffold536:911305..932445 |
| Genes list of scaffold | habu1_scaffold536 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable ribonuclease zc3h12c isoform x1 | GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s536_g02477.t1 | 1 | 1 | RNase_Zc3h12a | 186 | 340 | 0.0 | 214.0 | 0.0 | 0.0 | 213.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s536_g02477.t1 | gi|637286268|ref|XP_008106230.1| | PREDICTED: probable ribonuclease ZC3H12C [Anolis carolinensis] | 0.0 |
| habu1_s536_g02477.t1 | gi|530644518|ref|XP_005308933.1| | PREDICTED: probable ribonuclease ZC3H12C isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s536_g02477.t1 | gi|530644514|ref|XP_005308931.1| | PREDICTED: probable ribonuclease ZC3H12C isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s536_g02477.t1 | gi|564267192|ref|XP_006272411.1| | PREDICTED: probable ribonuclease ZC3H12C, partial [Alligator mississippiensis] | 0.0 |
| habu1_s536_g02477.t1 | gi|557320120|ref|XP_006033208.1| | PREDICTED: probable ribonuclease ZC3H12C [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.0 |
| Venom grand-1 | 0.7 |
| Pit, infrared sensing | 1.2 |
| Nose | 1.4 |
| Brain-1 | 1.9 |
| Eye | 0.7 |
| fetal fibroblast | 1.4 |
| venom gland-2 | 2.3 |
| Brain-2 | 1.7 |
| Spleen | 1.0 |
| Lung | 0.3 |
| Liver | 0.4 |
| Kidney | 0.9 |
| Pancreas | 0.4 |
| Small intestine | 1.8 |
| Large intestine | 0.7 |
| Stomach | 1.4 |
| heart | 1.7 |
| ovary | 2.1 |
| cheek muscle | 5.1 |
Transcript
| Transcript ID | habu1_s536_g02477.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02477.t1 gcaacttcatgggcttgaaggatcacttgaagcgtgacctcggtcacctctatgaggatacatcagagactcaaataagt gcaattgcaccttggtcaatgatagaaaaaccaactatggataaaattaattctagaaaggaggatcctaagaaagaact gtctgaagaaaccagaaccttcagttgtgattctgaggaaaatacaaattctgataatgaattgggaaaagcagctaaaa ttagaacagaaccatgctccttatctaaggatcacaaacagacgtattcatgtttagaaccacatattcgaaagcgcaat gaaattttacaagacattaagttggaggaagttcagataggatctaaagaaattaaaaaacctcctgatatggtgaaaga atatcaaaccaaacttgactttgcacttaagttaggttactctgaagaacaaattcaacttgtgctgaataaacttggta ctgatgctttaatcaatgatatattgggggaacttgtcaaacttggaaataaaactgaggcagatcagaatgtaatttct attaacactagtgtaatgcgagaagcatcttccattgattctcagagatctgactctccccttcaggacgacgtgcttgt ggatggtgacaacctgaggccaatagttatcgatggcagcaatgtggcaatgagccatggaaacaaagaagtattctctt gtcgtgggataaaactggccgtggattggtttttggaaagaggacacaaagatgtcacagtgtttgttccagcatggaga aaagaacagtcacgaccagatgcactcattacagatcaagaaatcttgcgtaaattagaaaaagagaaaattctggtatt cacgccatcacgtcgagttcaagggagaagggtggtatgctatgacgacagattcatagtgaagttggcttttgagtcag atggtataattgtatctaatgataattacagagatctagctaatgaaaagccagaatggaagaaatttattgatgagcga ctcctgatgtattcatttgtcaatgacaaattcatgcctccagacgatcctctcggccgtcatggcccaagtctggagaa ctttttgaggaagaaacctgttgtaccagaacataagaagcaaccctgtccatatggaaagaaatgcacttatggacaca aatgcaaatattatcacccagaaagaggaaatcaacctcagaggtcagtagctgatgaacttcgtgccatgtctaggaac acagctgccaaagctgctagtgaaggaggactggtgaaaagcaacagtgttccttgtagtactaagacagataacactac agatctcaagcgaactactccaaagaggcaatcagatcctagtataaggactcaagtctaccaagacttggaagaaaagc ttcccaccaaaaataaattgggaaccagatctgtaccttctttagttagtataccaacttctgctgctgcaaaaccccaa agtactgcacctttaactaatggccttccatctggagttcatttcccacctcaggatcaaagaccacagggaccatattc tccagtgataatgacaaccaaaaatcatggaacgccaatgccttatgagcagtatcccaaatgtgattctcctgtggatg taggttattactctatgctcagtgcatattcaaacctaagtatctctggtccccgaagtcccgaaagacgtttctctttg gacacagattatagaattagttctgtagcttctgattgtagtagtgaagggagcatgagttgtggcagtagtgattccta catgggttacaatgatcgatcctatgtgagttctcctgaccctcaactggaagagaatttaaaatgtcaacatatgcatc cccatagccatctgaactcgcagtccttcttacagagttaccacgatacactaaccagagtgcaaagttatagtcatgaa gaaccaaagcatcatccgaagcctccagttccatacatggctgtgcactttcagcatccaaacatgggaagccgttctac ttgtcctattgactaccctgcttctcagggttcacagcattcaaaaagcatgcctctggggagagctcttgcatccacaa gactggacagtatatcagactcacgtttgtatgataattctccattgagaaaaagaaaaacatactccgctcaagatgga ctcagtagttgggataggccaggctatgggatggatacatatggctatcgccaaacttactctttacccagcaatcccac cccaccatgttatgagcagtttgctttccaaagcttacctgagcaacccgatcagccttggcagataccttactgtggaa tgcctcaagatcttccaaggtaccaagacagtcgagagaaagtctacatcaacctgtgcaacattttcccgcctgacctg gtgaggattgttatgaagaggaatcctcacatggcagatgctcagcagcttgctgcagccattttagtggagaagtctca gctaggttattgatgacatgatattgatgatgcatctttatggtgtctatagttcagtttcagctgtattgctgagggag gtttgctacaatagcatttgtgatctccttctcagcaaggaggttatatagtaatccatatatgtgaaatactgtgccat ggaacctgtatgtataaccccacactggaagtaacaggatttattttaaatactcaagttttttttaaaaaaatatttca tggctggaatgtctctccagctgaatatattataactatgatgtctcaagtaagaatctctagtgcatgtgggttttata tgcagcactttttaatatttgttacatatttattaaattattgggtgttttatccttca |
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Protein
| Protein ID | habu1_s536_g02477.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02477.t1 MIEKPTMDKINSRKEDPKKELSEETRTFSCDSEENTNSDNELGKAAKIRTEPCSLSKDHKQTYSCLEPHIRKRNEILQDI KLEEVQIGSKEIKKPPDMVKEYQTKLDFALKLGYSEEQIQLVLNKLGTDALINDILGELVKLGNKTEADQNVISINTSVM REASSIDSQRSDSPLQDDVLVDGDNLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDVTVFVPAWRKEQSRP DALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEKPEWKKFIDERLLMYSF VNDKFMPPDDPLGRHGPSLENFLRKKPVVPEHKKQPCPYGKKCTYGHKCKYYHPERGNQPQRSVADELRAMSRNTAAKAA SEGGLVKSNSVPCSTKTDNTTDLKRTTPKRQSDPSIRTQVYQDLEEKLPTKNKLGTRSVPSLVSIPTSAAAKPQSTAPLT NGLPSGVHFPPQDQRPQGPYSPVIMTTKNHGTPMPYEQYPKCDSPVDVGYYSMLSAYSNLSISGPRSPERRFSLDTDYRI SSVASDCSSEGSMSCGSSDSYMGYNDRSYVSSPDPQLEENLKCQHMHPHSHLNSQSFLQSYHDTLTRVQSYSHEEPKHHP KPPVPYMAVHFQHPNMGSRSTCPIDYPASQGSQHSKSMPLGRALASTRLDSISDSRLYDNSPLRKRKTYSAQDGLSSWDR PGYGMDTYGYRQTYSLPSNPTPPCYEQFAFQSLPEQPDQPWQIPYCGMPQDLPRYQDSREKVYINLCNIFPPDLVRIVMK RNPHMADAQQLAAAILVEKSQLGY |
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