Gene
| Gene Model ID | habu1_s536_g02478 |
|---|---|
| Locus | habu1_scaffold536 : 935074 ... 972781 : - |
| To GenomeBrowser | habu1_scaffold536:935074..972781 |
| Genes list of scaffold | habu1_scaffold536 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| radixin isoform x2 | GO:0001726 GO:0003779 GO:0005615 GO:0005737 GO:0005856 GO:0005886 GO:0005925 GO:0010628 GO:0019898 GO:0030027 GO:0030033 GO:0030175 GO:0032420 GO:0044822 GO:0045176 GO:0045177 GO:0061028 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s536_g02478.t1 | 1 | 1 | FERM_N | 9 | 86 | 1.4e-19 | 69.8 | 4.7e-23 | 1.4e-19 | 69.8 |
| habu1_s536_g02478.t1 | 1 | 1 | FERM_M | 93 | 206 | 1.1e-25 | 90.2 | 3.7e-29 | 1.1e-25 | 90.2 |
| habu1_s536_g02478.t1 | 1 | 1 | FERM_C | 210 | 299 | 2.4e-33 | 114.2 | 2.6e-36 | 7.6e-33 | 112.5 |
| habu1_s536_g02478.t1 | 1 | 1 | ERM | 338 | 583 | 0.0 | 268.5 | 0.0 | 0.0 | 268.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s536_g02478.t1 | gi|602648942|ref|XP_007430883.1| | PREDICTED: radixin isoform X1 [Python bivittatus] | 0.0 |
| habu1_s536_g02478.t1 | gi|514724256|ref|XP_005014643.1| | PREDICTED: radixin isoform X2 [Anas platyrhynchos] | 0.0 |
| habu1_s536_g02478.t1 | gi|558135331|ref|XP_006117305.1| | PREDICTED: radixin [Pelodiscus sinensis] | 0.0 |
| habu1_s536_g02478.t1 | gi|719778741|ref|XP_010221655.1| | PREDICTED: radixin isoform X1 [Tinamus guttatus] | 0.0 |
| habu1_s536_g02478.t1 | gi|706115414|ref|XP_010194380.1| | PREDICTED: radixin isoform X2 [Colius striatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.9 |
| Venom grand-1 | 6.5 |
| Pit, infrared sensing | 8.9 |
| Nose | 6.7 |
| Brain-1 | 14.1 |
| Eye | 10.3 |
| fetal fibroblast | 16.1 |
| venom gland-2 | 6.3 |
| Brain-2 | 14.0 |
| Spleen | 7.2 |
| Lung | 11.1 |
| Liver | 9.7 |
| Kidney | 13.6 |
| Pancreas | 4.1 |
| Small intestine | 2.9 |
| Large intestine | 5.2 |
| Stomach | 3.8 |
| heart | 18.0 |
| ovary | 56.4 |
| cheek muscle | 41.4 |
Transcript
| Transcript ID | habu1_s536_g02478.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02478.t1 aagctgtgcaatcgccatctcccggtccagttgtttattccccctccgatcgattcaaaatcagttgtcgagaccttcga gagcaagcatccgacgagagctggccgcccccggcgccttagttcggcagcagaagaaaagaaaagagtgagtaagaaaa agagaagaaaaggaaaatgccgaaaccaattaatgtaagggttaccactatggatgcagagctagagtttgccattcaac cgaacacaacagggaaacagctttttgatcaggtagtaaaaacagttggcctacgagaagtctggttttttggattgcag tacgtggacagcaaagggtactcaacttggttaaaattaaacaaaaaggtaacacagcaagatgtaaggaaagaaaatcc atttcagttcaaattcagggcaaagttttttcccgaggatgtttctgaagaattgattcaagaaataactcagagactct tttttctgcaaatcaaagaagccatcttgaatgatgaaatctattgtccacctgaaactgcagttctactggcttcttat gctgttcaagcaaaatatgctgattacaataaggaaatacataagctaggatatttggccaatgacagacttttacctca gcgtgttttggaacaacataaactgacaaaagagcagtgggaagaaagaatacaaaattggcatgaagaacacagaggga tgttaagggaagactctatgatggaatacctcaaaattgcacaagatttggaaatgtatggagtcaactattttgaaatt aaaaacaaaaaaggaactgagttatggcttggtgttgacgctttgggtctgaatatttatgaacatgatgacaagttgac tccgaagataggttttccttggagtgagataagaaatatatcatttaatgacaaaaagtttgtgataaagcccattgaca aaaaggcccctgattttgtgttttatgcaccccgtctgagaattaataagcggatattggcactatgcatgggaaaccat gagctatacatgagaaggagaaaaccagatacaattgaagtgcaacagatgaaggcccaagctagagaagaaaaacatca aaaacaattggagagggcccaactagagaatgaaaaaaagaaaagggaaatagctgaaaaagaaaaggaaagaatagagc gtgaaaaagatgaattgatagaacgactaagacagatcgaagaacagacaatgaaggcccaaaaagaactggaagagcaa acaagaagagctctagagctagatcaggaacgaaaaaaagcaaaagaggaagcagagcgcttggaaaaagaacgaagaac tgctgaagaggcaaaagctgctctagccaaacaggcagcagatcagatgaagaatcaggaacaactagcagcagaacttg ctgaatttactgcaaagattgcacttttggaagaagccaagaaaaaaaaggaagaagaagcgtcagaatggcaacataaa gcttttgcagctcaagaagatctggaaaagaccaaagaagaactaaaaactgtaatgtcagctccgcccccacctccacc cccaccaatacttcctcccacagataatgaacatgatgaacaagatgagaataatgctgaagcaagtgctgaactggctt ctgaaggtattatgaaccatagaagtgaggaagaacgtatcacagaaacacagaagaatgaacgagtaaagaaacaactt caggctctcagttctgaattggcccaagccagagatgaaactaagaaaacccagaatgatgtacttcatgctgaaaatgt taaagcaggccgtgataaatacaagactcttcgacagatacggcaaggcaatacaaagcagcggattgatgagtttgaag caatcacagcacagcacagcatttctgaaaacctactaaaatatactatagaagaaccagtttcaggaggtgaacagtaa cagcagcctctgaatgtctggtgtatcatgacaaaaaaagctgaactaaaggattaaagctgtcaacagtagatcattgg |
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Protein
| Protein ID | habu1_s536_g02478.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02478.t1 MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVRKENPFQFKF RAKFFPEDVSEELIQEITQRLFFLQIKEAILNDEIYCPPETAVLLASYAVQAKYADYNKEIHKLGYLANDRLLPQRVLEQ HKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGF PWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLER AQLENEKKKREIAEKEKERIEREKDELIERLRQIEEQTMKAQKELEEQTRRALELDQERKKAKEEAERLEKERRTAEEAK AALAKQAADQMKNQEQLAAELAEFTAKIALLEEAKKKKEEEASEWQHKAFAAQEDLEKTKEELKTVMSAPPPPPPPPILP PTDNEHDEQDENNAEASAELASEGIMNHRSEEERITETQKNERVKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRD KYKTLRQIRQGNTKQRIDEFEAITAQHSISENLLKYTIEEPVSGGEQ |
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