Gene
| Gene Model ID | habu1_s536_g02480 |
|---|---|
| Locus | habu1_scaffold536 : 1022327 ... 1105391 : - |
| To GenomeBrowser | habu1_scaffold536:1022327..1105391 |
| Genes list of scaffold | habu1_scaffold536 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho gtpase-activating protein 20 | GO:0005622 GO:0007165 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s536_g02480.t1 | 1 | 1 | RA | 200 | 276 | 3.3e-10 | 40.3 | 4.1e-13 | 1.2e-09 | 38.5 |
| habu1_s536_g02480.t1 | 1 | 1 | RhoGAP | 379 | 524 | 6.2e-38 | 129.8 | 5.40004e-41 | 1.6e-37 | 128.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s536_g02480.t1 | gi|602648950|ref|XP_007430887.1| | PREDICTED: rho GTPase-activating protein 20 [Python bivittatus] | 0.0 |
| habu1_s536_g02480.t1 | gi|637285979|ref|XP_008106171.1| | PREDICTED: rho GTPase-activating protein 20 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s536_g02480.t1 | gi|637285983|ref|XP_008106172.1| | PREDICTED: rho GTPase-activating protein 20 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s536_g02480.t1 | gi|637285987|ref|XP_008106173.1| | PREDICTED: rho GTPase-activating protein 20 isoform X3 [Anolis carolinensis] | 0.0 |
| habu1_s536_g02480.t1 | gi|564267190|ref|XP_006272410.1| | PREDICTED: rho GTPase-activating protein 20 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.2 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.4 |
| Nose | 0.8 |
| Brain-1 | 9.6 |
| Eye | 2.7 |
| fetal fibroblast | 2.3 |
| venom gland-2 | 0.1 |
| Brain-2 | 9.6 |
| Spleen | 0.5 |
| Lung | 0.3 |
| Liver | 0.0 |
| Kidney | 0.7 |
| Pancreas | 0.2 |
| Small intestine | 0.3 |
| Large intestine | 0.3 |
| Stomach | 0.5 |
| heart | 0.1 |
| ovary | 31.2 |
| cheek muscle | 0.2 |
Transcript
| Transcript ID | habu1_s536_g02480.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02480.t1 gccgtttctgtggcggcggcggcggcgctttttgcgcgtttctcggttgcgctgctgtcttaatttcccatgcgagccgt ccggagagactccgggaagggctgccgccttttgcccaagatcgaggaccagcctgggatgacctcaggcttgctttggg ctgtttgagcagcgcggcgatcaaggggaatctaatggaagcgatgtccccgcaacaggatcacatcggccaggggcgct cttcctccctgaccggggggaatcggcgttccgccgcttcggagggcaagaagcagaaaatgaagagcttggcccaaaga cgacagtcagcaccatccctagttctcagcaaagctctgaataaagccagaacaagtgccagggaaggctgcttctcccc aatcagtccggagacatgtccactggtacagtccttcctttctccagctcgagcattcgttttggaaggacatgtacaac tgaagacaggtctgcagactcaggagcgacacctgttcctctttactgatatccttgtggttgctaaatccaagtcccag ttgcatttcaaactgaagagccaggcacgcctctctgaaatgtggactgcatcttgcttggaagaagtctgtgagagcag cactaatgcggatcgatcttttgttttgggatggcccacaaccaactgtgtcgctagtttcagttccgtggagcaaaaag agaagtggttcacttcccttcaaagtcgaatcaaagaagagaaagcaaaagactatcccaagagtattccgttgaagatt cttgcaaaggatattggaaattgcgtatattcaaaaaccttaaccattactaacctgaacacagcaaatgatgtgatcct cttggccctgcagcagcttggaattaatggttctgagaaggattatcagctgtgggttaattctgggaaagaagacgccc cttaccctcttattgggcacgaatatccttttggaattaaaatgagccacattcgtgacactttgccccagacgcagggg tcaaaggatggggattgccctctggatcttcagggagccttcctaatagaacagttgccccgtgagcttcagtgccagtt cattctcaagccaagtcgcctggccactgggcatcagttacatgagttaagccaaaagccatttaaaaggagaagatcaa ttataaactgggccttctggcgagaaacaggtgttccagtggaccatttagtgccatctccaacatcttccaaattgggg aagctgttcggcctttccctctcatccctctgtgagaatgataacctgcccaaacctatcttggaaatgctttgctttct ctatcaagagggaccttttactcggggtattttcagacgctcagcaaatgcaaaatcctgcagagagctgaaagagaagc ttgactcgggtgaagatgtacaccttctttgcgagtccgtgtttgtgatagcctctgtgtttaaggatttccttcgtaac atcccaggaagcatcttctcatctgagctctgtgagcagtgggtttccttaatggatgaagggaaccatgaagagaaaat gaaaaccatctacagactaatggaacagcttccaagtgccaatgtagtgctgttgcgttatctcttcggagtattacaca gcatacaaaagcaatctgaaggcaaccagatgactgcattcaatttagcagtgtgcattgcacccagcttactctggcct ccggctcctacagatcctggtactgaaggagaattcaccaagaaggtttctgtccttgtacagtttctcattgaaaattg ctgcaggatctttggggaagaacttacttctgtctttgcagatattttgcccaaaaatgataaccgggaagatagttcag atctctcttcttttcatctgaatgactcctcctacgatagtttggaaaatgaattaaatgactgcacagaccccacattt aacaacctttttaaaaagcgagggaaagagaacaggagtagagactctgttttgactttgagcgactgtgatttggactc accagaagctggagatgctcagattaaattaccaatcaagtctcagccagtatccatttctgtgggcttccatcagaaat ctccatcacgggagcactccgagaatgagtctctgtgttccatcacatcaggttattcgtcaacggccatctcagatgtt ctgaaaagctcaaggaggcataggcgctgttcagagcccacaattggtcttcttgactccaagtttacaccactcagtgg gtttcatgaaagtgctgtgcgcaaagccagctgtgatgctgttctgtcccacacaaatgaagactatgtcgagcaatttc gttctctccaagtagaaggccagaaacttataaatcagaatttggttatggggatagaagtaagcagcaaggatggtcct gaaagtcatatcagtgaaaagaaagatgtttctaaccgtcttctcctgccgccaccacttagattaaatatttgctcaag gacaagctgttctagcctctcatcaccagggacttccccatcagggtcttcaatgagctctcttgatagtgctttttccc agttttcggactattcggtgtttaccccaactgaggcttcctctcctctagactgcgcctctcagccacaaaggaaattt ggagaagtttctcctgattttaatcctttttcaggagtccaccttggacccggaattagcactttttctaaccaagccaa caataatcaaaccagtagcttgatacctattaagaaagagaacctggaatggcttcctcataaaaacccggtcactctgc atcccagcacgtggttgaaaagtggtgcttccaccatgaaaaactggactctacggaaaagggaaagagcctccaagcag gatgagaaaaagaacacttctgtgaaaataactttggagtcagcagcattttcttctgagaataatttagctcaggggca acaagcagtgggcaacatttgtgcaacagatgtcaattctgtagcggggtacttggagagaggatctgttcaggaagttg ggcagctcacaagccttccttcctgccccatggaagcccaggagaagcggctaaaggccttagagcttttagcagagcaa agcaaggaggaggaagaagaggaaaattctacattgcttcttccttataaacaaccaccacccagtcttaagccacagtc tcaaaataaacccaagctagatgttgatttgggggctgaccatcagtgggtcattgagagaaagttaaatgaaactgcac gtttcacaggagttgcagtccagcaagcagcaaattccaaaactgataaatcttcattgagcagagagcccaaagatgct gacaccaacttggaaaatgaatattgtgcctctgcacacttagtcagggctgaggatgaatgttcatttcaaatggctcc caataatagcttttccaaatcaccggaaggaaccaatgctaataaaatggaatggctgaaaaagttgtgcagtgatccca aattcaagaatacagaccagacatttttcacagaggaatcctatgtttgagcaactgatataaaagaatgttatttcaat ttaatttggtgttgctttaatatcccaggggatgtagtctcatcagggaactgagggaacttgtgctatttgagggatga gtggaatggaatgattttcttagctatattcttgcaatttttaaagacatttcctggtatctgggaaggtcacgtgaaat gttttaagagaaacacttgattgtataacactagcaaacacttgtatatgtgcttgctatgtaactttttaaaaataact tgtgtatattctggacattgtaaatttatgtttagtgtccatggtgatttggctgtaatgtgtaagattggcttggcctt cataactttggtattgtactcttattttgaagccaatggtccatttcattgttctccaagaaaggatggcttaaagttta tgaagtgtctgttcagtagttgcagtcactttcttcccttaccaagagaaaaaaaaaataaaggatgacttttgaccttt tttg |
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Protein
| Protein ID | habu1_s536_g02480.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02480.t1 MEAMSPQQDHIGQGRSSSLTGGNRRSAASEGKKQKMKSLAQRRQSAPSLVLSKALNKARTSAREGCFSPISPETCPLVQS FLSPARAFVLEGHVQLKTGLQTQERHLFLFTDILVVAKSKSQLHFKLKSQARLSEMWTASCLEEVCESSTNADRSFVLGW PTTNCVASFSSVEQKEKWFTSLQSRIKEEKAKDYPKSIPLKILAKDIGNCVYSKTLTITNLNTANDVILLALQQLGINGS EKDYQLWVNSGKEDAPYPLIGHEYPFGIKMSHIRDTLPQTQGSKDGDCPLDLQGAFLIEQLPRELQCQFILKPSRLATGH QLHELSQKPFKRRRSIINWAFWRETGVPVDHLVPSPTSSKLGKLFGLSLSSLCENDNLPKPILEMLCFLYQEGPFTRGIF RRSANAKSCRELKEKLDSGEDVHLLCESVFVIASVFKDFLRNIPGSIFSSELCEQWVSLMDEGNHEEKMKTIYRLMEQLP SANVVLLRYLFGVLHSIQKQSEGNQMTAFNLAVCIAPSLLWPPAPTDPGTEGEFTKKVSVLVQFLIENCCRIFGEELTSV FADILPKNDNREDSSDLSSFHLNDSSYDSLENELNDCTDPTFNNLFKKRGKENRSRDSVLTLSDCDLDSPEAGDAQIKLP IKSQPVSISVGFHQKSPSREHSENESLCSITSGYSSTAISDVLKSSRRHRRCSEPTIGLLDSKFTPLSGFHESAVRKASC DAVLSHTNEDYVEQFRSLQVEGQKLINQNLVMGIEVSSKDGPESHISEKKDVSNRLLLPPPLRLNICSRTSCSSLSSPGT SPSGSSMSSLDSAFSQFSDYSVFTPTEASSPLDCASQPQRKFGEVSPDFNPFSGVHLGPGISTFSNQANNNQTSSLIPIK KENLEWLPHKNPVTLHPSTWLKSGASTMKNWTLRKRERASKQDEKKNTSVKITLESAAFSSENNLAQGQQAVGNICATDV NSVAGYLERGSVQEVGQLTSLPSCPMEAQEKRLKALELLAEQSKEEEEEENSTLLLPYKQPPPSLKPQSQNKPKLDVDLG ADHQWVIERKLNETARFTGVAVQQAANSKTDKSSLSREPKDADTNLENEYCASAHLVRAEDECSFQMAPNNSFSKSPEGT NANKMEWLKKLCSDPKFKNTDQTFFTEESYV |
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