Gene
| Gene Model ID | habu1_s536_g02485 |
|---|---|
| Locus | habu1_scaffold536 : 1371003 ... 1425481 : - |
| To GenomeBrowser | habu1_scaffold536:1371003..1425481 |
| Genes list of scaffold | habu1_scaffold536 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| paraspeckle component 1 | GO:0003676 GO:0031981 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s536_g02485.t2 | 2 | 1 | RRM_1 | 63 | 127 | 4.6e-33 | 112.6 | 3.9e-19 | 9.6e-16 | 57.1 |
| habu1_s536_g02485.t2 | 2 | 1 | RRM_6 | 63 | 127 | 7.5e-22 | 77.0 | 1.2e-14 | 3.0e-11 | 43.1 |
| habu1_s536_g02485.t2 | 2 | 1 | RRM_5 | 78 | 131 | 3.0e-12 | 46.1 | 1.2e-09 | 2.9e-06 | 27.0 |
| habu1_s536_g02485.t2 | 2 | 2 | RRM_1 | 137 | 195 | 4.6e-33 | 112.6 | 8.1e-18 | 2.0e-14 | 52.9 |
| habu1_s536_g02485.t2 | 2 | 2 | RRM_6 | 138 | 196 | 7.5e-22 | 77.0 | 4.7e-11 | 1.2e-07 | 31.6 |
| habu1_s536_g02485.t2 | 2 | 2 | RRM_5 | 155 | 196 | 3.0e-12 | 46.1 | 1.7e-06 | 0.0042 | 16.9 |
| habu1_s536_g02485.t2 | 1 | 1 | NOPS | 208 | 259 | 5.5e-30 | 103.5 | 3.0e-33 | 7.3e-30 | 103.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s536_g02485.t2 | gi|529419778|ref|XP_005229752.1| | PREDICTED: paraspeckle component 1 [Falco peregrinus] | 0.0 |
| habu1_s536_g02485.t2 | gi|449483811|ref|XP_002190822.2| | PREDICTED: paraspeckle component 1 isoform X1 [Taeniopygia guttata] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 13.3 |
| Venom grand-1 | 19.1 |
| Pit, infrared sensing | 14.9 |
| Nose | 14.7 |
| Brain-1 | 13.8 |
| Eye | 12.9 |
| fetal fibroblast | 27.0 |
| venom gland-2 | 16.7 |
| Brain-2 | 11.3 |
| Spleen | 13.9 |
| Lung | 11.8 |
| Liver | 18.0 |
| Kidney | 18.7 |
| Pancreas | 23.5 |
| Small intestine | 12.5 |
| Large intestine | 12.1 |
| Stomach | 16.9 |
| heart | 10.9 |
| ovary | 39.5 |
| cheek muscle | 17.9 |
Transcript
| Transcript ID | habu1_s536_g02485.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02485.t1 ttgatgcctggtagcgtttcaaatcctgtgcacatgcgcaccaagaaagcgagaggcggggcgatgttactagtcgtcag tgggtagtgatcttgccgccattttggactttccttttttttccccctccccttctccttctttacagcaatcgaaaaaa gcagcgatagagcggagagctcttcgtgcgctttctttccctcctttccgtcttatttgtgatccgtacggttagaaaac tcgagctatgtccgccaacaggaacctcaagcaagtgaggattgaaaacagttctccggcgtcggctcctccgatgagca tggtgggcggcggccctatgaagggactgaggggtttggagcagccgtccgagaatgaagctttggccgccgctagagtg atggtgaagaaggaagaggaggaaaacaacagaggctttaccgtcgacattaagagcttcctcaagcctggcgagaagag ctatacgcaaaggtgtcgcctcttcgtcgggaaccttcccaccgacatcaccgaagaggattttaaacgcctttttgagc gctacggggagcccagcgaggtcttcattaaccgcgaccgtggtttcggcttcattcgcctggagtccaggaccctggct gaaatagcaaaggcagaacttgatggaaccattttaaagagcaggccactccgaattcgatttgccacccatggagctgc tttaacagttaagaatctttcaccagttgtttccaatgagcttttggaacaagctttctctcaatttgggcctgtggaaa gagcggttgttgtcgtagatgatcgtggtagagcaacaggcaaaggttttgtggaatttgctgcgaaacctccagcgcgt aaagctctagaaagatgtagtgatggtgcattcttgcttacaacaacacctagacctgttcttgttgaacctatggaaca atttgataatgaagatggtttgcctgagaaattaatgcaaaaaacacaacagtatcataaggaaagagaacagcctccac gttttgcccaacctggaacatttgaatttgaatatgcttcacgatggaaagctcttgatgaaatggaaaaacaacagcgg gaacaagttgatagaaatattagagaagctaaggagaagctagaggcagaaatggaagcagctcgacatgagcatcagtt aatgttgatgagacaagatcttatgaggcgtcaggaagaattgagacgtttagaagaacttcgaaaccaggagctacaga aaagaaagcagatacaattaaggcatgaagaagaacataggagacgtgaagaagagatgctgcgccagagggaacaggag gaactgaggagacagcaagaaggtttcaagccgaattttatggatactagagaacaggaaatgagaatgggtgatatggg tcctcgtggagcattaaacatgggagatgcctttagcccagcacctgctggaaaccaaggtcctcctcctccacctccaa tgatgagtatgaatatgaacaacagagggacaatgcctggccctgcaatgggtccaggtccttcgttggggccagaagga gctacaaacattggaaccccaatgatgccagataatggaaccgtggaagctgttaagattctgaagtatggctgaagatg caaaacacaagggaaggatgaattctttataatatttcaggacagtggcatcatgcagagttaagcaagcaactatgatc tcaggattgtattgacaaaaaggaagactcctctgagaacagtaaacataaggtggacaggaataaaacgaggacatcat ttaaaatttcaaagttggagtacagcttcaaaacttcattcagcttttgcttgaagaatctgtcttgaaacttaagagcc ccaagctccttgattcagtatattgctcctttgaaactgaagaggaaaactatatctacataagaacaacactgcttgaa ttgcgtatttatgaaaactatgtaaactttcagtcattaaatgattccaaaattagtttttgc |
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| Transcript ID | habu1_s536_g02485.t2 |
| Definition | - |
>habu1_s536_g02485.t2 ttgatgcctggtagcgtttcaaatcctgtgcacatgcgcaccaagaaagcgagaggcggggcgatgttactagtcgtcag tgggtagtgatcttgccgccattttggactttccttttttttccccctccccttctccttctttacagcaatcgaaaaaa gcagcgatagagcggagagctcttcgtgcgctttctttccctcctttccgtcttatttgtgatccgtacggttagaaaac tcgagctatgtccgccaacaggaacctcaagcaagtgaggattgaaaacagttctccggcgtcggctcctccgatgagca tggtgggcggcggccctatgaagggactgaggggtttggagcagccgtccgagaatgaagctttggccgccgctagagtg atggtgaagaaggaagaggaggaaaacaacagaggctttaccgtcgacattaagagcttcctcaagcctggcgagaagag ctatacgcaaaggtgtcgcctcttcgtcgggaaccttcccaccgacatcaccgaagaggattttaaacgcctttttgagc gctacggggagcccagcgaggtcttcattaaccgcgaccgtggtttcggcttcattcgcctggagtccaggaccctggct gaaatagcaaaggcagaacttgatggaaccattttaaagagcaggccactccgaattcgatttgccacccatggagctgc tttaacagttaagaatctttcaccagttgtttccaatgagcttttggaacaagctttctctcaatttgggcctgtggaaa gagcggttgttgtcgtagatgatcgtggtagagcaacaggcaaaggttttgtggaatttgctgcgaaacctccagcgcgt aaagctctagaaagatgtagtgatggtgcattcttgcttacaacaacacctagacctgttcttgttgaacctatggaaca atttgataatgaagatggtttgcctgagaaattaatgcaaaaaacacaacagtatcataaggaaagagaacagcctccac gttttgcccaacctggaacatttgaatttgaatatgcttcacgatggaaagctcttgatgaaatggaaaaacaacagcgg gaacaagttgatagaaatattagagaagctaaggagaagctagaggcagaaatggaagcagctcgacatgagcatcagtt aatgttgatgagacaagatcttatgaggcgtcaggaagaattgagacgtttagaagaacttcgaaaccaggagctacaga aaagaaagcagatacaattaaggcatgaagaagaacataggagacgtgaagaagagatgctgcgccagagggaacaggag gaactgaggagacagcaagaaggtttcaagccgaattttatggatactagagaacaggaaatgagaatgggtgatatggg tcctcgtggagcattaaacatgggagatgcctttagcccagcacctgctggaaaccaaggtcctcctcctccacctccaa tgatgagtatgaatatgaacaacagagggacaatgcctggccctgcaatgggtccaggtccttcgttggggccagaagga gctacaaacattggaaccccaatgatgccagataatggaaccgtgcattctgagagatttcctcaaggaggcccaccaca aatgggttcacctatggttaataggccaggctctgaaactcctcaaccagctatgggtggtgtaggtgccgtcaatagtg gacccagtggctttggtagaggaaatcctgggggcagctttgaaggacctaacaagcgtcgcagatattaaaacattcat ttttgtattcttgtgaaattgaatgaatgactatctggtgttatacctataatttcaactgttatttttgaatggtttta ctgttaatatagacattaaccttttttgtaaactatagacatttttttgtatttagtcataggcttaggatagtgtagaa ataatgcacttcattttgtacatcagttatttgtgactgccacaaaatacaatgtgaccgtgctgtgaaacttgtgagtt acatgcttataataaaataaacagtttaaatgattttg |
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Protein
| Protein ID | habu1_s536_g02485.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02485.t1 MSMVGGGPMKGLRGLEQPSENEALAAARVMVKKEEEENNRGFTVDIKSFLKPGEKSYTQRCRLFVGNLPTDITEEDFKRL FERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGP VERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLLTTTPRPVLVEPMEQFDNEDGLPEKLMQKTQQYHKEREQ PPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQE LQKRKQIQLRHEEEHRRREEEMLRQREQEELRRQQEGFKPNFMDTREQEMRMGDMGPRGALNMGDAFSPAPAGNQGPPPP PPMMSMNMNNRGTMPGPAMGPGPSLGPEGATNIGTPMMPDNGTVEAVKILKYG |
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| Protein ID | habu1_s536_g02485.t2 |
| Definition | - |
>habu1_s536_g02485.t2 MSMVGGGPMKGLRGLEQPSENEALAAARVMVKKEEEENNRGFTVDIKSFLKPGEKSYTQRCRLFVGNLPTDITEEDFKRL FERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGP VERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAFLLTTTPRPVLVEPMEQFDNEDGLPEKLMQKTQQYHKEREQ PPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQE LQKRKQIQLRHEEEHRRREEEMLRQREQEELRRQQEGFKPNFMDTREQEMRMGDMGPRGALNMGDAFSPAPAGNQGPPPP PPMMSMNMNNRGTMPGPAMGPGPSLGPEGATNIGTPMMPDNGTVHSERFPQGGPPQMGSPMVNRPGSETPQPAMGGVGAV NSGPSGFGRGNPGGSFEGPNKRRRY |
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