Gene
| Gene Model ID | habu1_s536_g02500 |
|---|---|
| Locus | habu1_scaffold536 : 2388323 ... 2408893 : + |
| To GenomeBrowser | habu1_scaffold536:2388323..2408893 |
| Genes list of scaffold | habu1_scaffold536 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| gamma-sarcoglycan | GO:0016012 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s536_g02500.t2 | 1 | 1 | Sarcoglycan_1 | 12 | 252 | 0.0 | 245.2 | 0.0 | 0.0 | 244.9 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.1 |
| Venom grand-1 | 6.8 |
| Pit, infrared sensing | 6.3 |
| Nose | 2.5 |
| Brain-1 | 1.9 |
| Eye | 2.3 |
| fetal fibroblast | 8.1 |
| venom gland-2 | 0.8 |
| Brain-2 | 0.6 |
| Spleen | 1.3 |
| Lung | 18.0 |
| Liver | 0.5 |
| Kidney | 1.2 |
| Pancreas | 0.4 |
| Small intestine | 1.3 |
| Large intestine | 13.6 |
| Stomach | 10.3 |
| heart | 29.6 |
| ovary | 6.7 |
| cheek muscle | 46.0 |
Transcript
| Transcript ID | habu1_s536_g02500.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02500.t1 acgaaaaagccgcgcttgttgctggacgagctcgtttgggctgcgaggggaggaaggggagggaccgccgccggaggaag gctggtgaatcctgggcgcgctccacggtctcccccggcgaagaagggagatgcgatgacttcgctcaccctcgttcagc cccccgaagaggacgcccgtgggaagatcagcagatggtacgtgaagagtatatttcaccaacaccagttgtgaatcttg ctctgacaatttggattcttaaagtaatgtggttttcatcagctggaatgggatacctacaggttaatactgatgggctt cgtctagaaggagagtctgaatttttatatccattatatgtcaaagaaattcactccagaaaggattcacccttactttt gaaatcttctcataatgtgactttgaatgcacgcaataatgatggaaatgtcacaggcagattaagtgtagatccagaca tggtacagttccatagtcaacaatttcagatcaactctatgaatctcaatgaaaagccactttttacagtgcatgagagt gacactgtgattggtacagagaaacttcgagtcacaggtccagaaggtgccctttgcgaacattctgtggaaacacccct tgtccaaggtgtgggagatgatgtcaaaaatctaacacttaaacttgaatcaccaacacggtctctcaccatgaatgctc caagagaagttcacatcaaagcagaaaatggagatgttattggactctctcatttggatatcacattccatagtaccaat ggcatggtctttgatgctcaaaatttgctactgccagatttgcttcaaggaacaaatggagaatctgagagatctgaagg actttatgaaatttgtgcttgcccagatggaaggttatacttatcagtggctgatacagtttctacttgcttacaataca gtcataattgtcaataaagcaccagaacacaacttgatattctttggcattcttgcttggtttgtaaaaccatcaagtgg aagattaggataatgtaatttaattgtttagaaaacatgaatgattttaggttttatcagatatcaggtagataagcata tgatttgtcatttgtagcttgaactccttctttcccttcatcttacgtttcttgattatattatcttttttgctttgtga ctttggcttcttcataagtacaagtagtcctcaacttataaccacgagactggaatttccattgctaggtgatgcagatc actaagtgagtcacaactgattttatgagggttttttgctgtggtccttaagcaaatcatcatgatcattgacttgcttg ttggaaggcccctgggaagatgtgatcctgggttataaatacatgttggggaccaggcatccaaattttgatcatatgac cactgggacactgcaacagtcttaagtgcaaggactgatcgtaagtccattttcccagcggcactgtaacttcaaacagt cattaaacaaacataagttgacgactacc |
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| Transcript ID | habu1_s536_g02500.t2 |
| Definition | - |
>habu1_s536_g02500.t2 gtggccaaacatgtaaacaagttgagccacgcctaaaatattttccactgtgggtacaagtgtagaaattcattgtcagg ctgaaggcgtttgatctgagttagatctgcagtttctgctgttgtttaaaatcttccaagcagatggtacgtgaagagta tatttcaccaacaccagttgtgaatcttgctctgacaatttggattcttaaagtaatgtggttttcatcagctggaatgg gatacctacaggttaatactgatgggcttcgtctagaaggagagtctgaatttttatatccattatatgtcaaagaaatt cactccagaaaggattcacccttacttttgaaatcttctcataatgtgactttgaatgcacgcaataatgatggaaatgt cacaggcagattaagtgtagatccagacatggtacagttccatagtcaacaatttcagatcaactctatgaatctcaatg aaaagccactttttacagtgcatgagagtgacactgtgattggtacagagaaacttcgagtcacaggtccagaaggtgcc ctttgcgaacattctgtggaaacaccccttgtccaaggtgtgggagatgatgtcaaaaatctaacacttaaacttgaatc accaacacggtctctcaccatgaatgctccaagagaagttcacatcaaagcagaaaatggagatgttattggactctctc atttggatatcacattccatagtaccaatggcatggtctttgatgctcaaaatttgctactgccagatttgcttcaagga acaaatggagaatctgagagatctgaaggactttatgaaatttgtgcttgcccagatggaaggttatacttatcagtggc tgatacagtttctacttgcttacaatacagtcataattgtcaataaagcaccagaacacaacttgatattctttggcatt cttgcttggtttgtaaaaccatcaagtggaagattaggataatgtaatttaattgtttagaaaacatgaatgattttagg ttttatcagatatcaggtagataagcatatgatttgtcatttgtagcttgaactccttctttcccttcatcttacgtttc ttgattatattatcttttttgctttgtgactttggcttcttcataagtacaagtagtcctcaacttataaccacgagact ggaatttccattgctaggtgatgcagatcactaagtgagtcacaactgattttatgagggttttttgctgtggtccttaa gcaaatcatcatgatcattgacttgcttgttggaaggcccctgggaagatgtgatcctgggttataaatacatgttgggg accaggcatccaaattttgatcatatgaccactgggacactgcaacagtcttaagtgcaaggactgatcgtaagtccatt ttcccagcggcactgtaacttcaaacagtcattaaacaaacataagttgacgactacc |
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Protein
| Protein ID | habu1_s536_g02500.t1 |
|---|---|
| Definition | - |
>habu1_s536_g02500.t1 MVREEYISPTPVVNLALTIWILKVMWFSSAGMGYLQVNTDGLRLEGESEFLYPLYVKEIHSRKDSPLLLKSSHNVTLNAR NNDGNVTGRLSVDPDMVQFHSQQFQINSMNLNEKPLFTVHESDTVIGTEKLRVTGPEGALCEHSVETPLVQGVGDDVKNL TLKLESPTRSLTMNAPREVHIKAENGDVIGLSHLDITFHSTNGMVFDAQNLLLPDLLQGTNGESERSEGLYEICACPDGR LYLSVADTVSTCLQYSHNCQ |
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| Protein ID | habu1_s536_g02500.t2 |
| Definition | - |
>habu1_s536_g02500.t2 MVREEYISPTPVVNLALTIWILKVMWFSSAGMGYLQVNTDGLRLEGESEFLYPLYVKEIHSRKDSPLLLKSSHNVTLNAR NNDGNVTGRLSVDPDMVQFHSQQFQINSMNLNEKPLFTVHESDTVIGTEKLRVTGPEGALCEHSVETPLVQGVGDDVKNL TLKLESPTRSLTMNAPREVHIKAENGDVIGLSHLDITFHSTNGMVFDAQNLLLPDLLQGTNGESERSEGLYEICACPDGR LYLSVADTVSTCLQYSHNCQ |
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