Gene
| Gene Model ID | habu1_s541_g02553 |
|---|---|
| Locus | habu1_scaffold541 : 606301 ... 619341 : + |
| To GenomeBrowser | habu1_scaffold541:606301..619341 |
| Genes list of scaffold | habu1_scaffold541 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cyclin-a1 isoform x2 | GO:0000079 GO:0005634 GO:0010389 GO:0015630 GO:0019901 GO:0051301 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s541_g02553.t2 | 1 | 1 | Cyclin_N | 160 | 286 | 0.0 | 159.4 | 0.0 | 0.0 | 158.5 |
| habu1_s541_g02553.t2 | 1 | 1 | Cyclin_C | 288 | 405 | 1.7e-30 | 105.3 | 3.6e-34 | 2.7e-30 | 104.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s541_g02553.t2 | gi|557329478|ref|XP_006037644.1| | PREDICTED: cyclin-A1 isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s541_g02553.t2 | gi|557329480|ref|XP_006037645.1| | PREDICTED: cyclin-A1 isoform X3 [Alligator sinensis] | 0.0 |
| habu1_s541_g02553.t2 | gi|557329476|ref|XP_006037643.1| | PREDICTED: cyclin-A1 isoform X1 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.0 |
| Brain-1 | 0.1 |
| Eye | 0.0 |
| fetal fibroblast | 0.9 |
| venom gland-2 | 0.1 |
| Brain-2 | 0.1 |
| Spleen | 0.0 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.4 |
| heart | 0.0 |
| ovary | 70.6 |
| cheek muscle | 0.8 |
Transcript
| Transcript ID | habu1_s541_g02553.t1 |
|---|---|
| Definition | - |
>habu1_s541_g02553.t1 actgattggctaccggctatataggctgggacgggaggccggaggggctgcgttaagtccttgtttggctccgtttgttc cccctggactcaaggaatcccaaaggaacgcctttcactacagtatcagctgctgatctgcaggaaatgtatcatagcag caaggatgatgagatggtacaagctggacttcggggtgccctgccacttccagttgtaccccatgacagtcagaattccc agcacagagttgttcttggggagctgcgtgaaaatggacagtgtctaagatcctcttcccacggaccttccataatgaga ccgatgtctggatctgaaaatatttttcctatgactggcaaatatctaatgccaacctctgtgtcatccaagaaaagctt tactgtttacatagatgaagtggaagagagaagcaaaaataattttatagttgcagaagaagtggaacatagtatgtgtg aaaccgagaccagtacaataaaacctagccttcatctactactgaacttaagtacagtgtctccaatgttggtggataag tccctacaaaatgaagattgtgaggataacgaagtggacatgagtattgatgaatatgcagaagatattcataattattt aagagatgcagaagtaagatataggcccagaccatgctacatgaggaagcagcctgatataacctcagggatgcgtgcca tcttagtggattggctagcagaagttggtgaagaatacaagcttcagacagagacgttgtaccttgctgtgaactacttg gacagatttctttcttccatgtcggtcctcagaggaaaattgcaacttgtaggaacagcagcaattctcctagctgcgaa atatgaagaaatctaccccccagaagtagaagaatttgtgtacataacagatgacacttattccaaaaagcaactgttgc gaatggaacacctgcttcttaaagtacttgcttttgatttaactgtgccgaccatcaatcagttcctccttcaatattta caaagacacggtgtaagtcttaagacggagaactttgcgaggtacatagcagaattgagtctccttgaagcagacccatt cctgaagtatctgccctcacaaatggcagcagctgcttattgtctagcgaactacaccgtgaaccggcatttctggtact gaagctgtaactctgtcttctcatgagcagccagaaactcttgctgctttcactggatactcactgagtgagattgtgcc ttgcctaagtgacctacacaaagcatgcctcgatgcgcctcatcgacagcagcaagcaataagggaaaaatacaagctga ctaaatatatgcaagtatcccttctggagccaccaactgttctacctctacattgaattgcagcatgcccagaaaaacac agaagctgaagcacttgcctcctgatcaatagagttgatctggccaatttattatttttatagggcactgcaggtcacgt gtctaatctgctgctaaaactatttttagataaccgtctgatctttagctgtattgtattacaaggactcagtattgtag tttttatcataacctaaagacacttttaataaacatcttcgtcttcaaaagaaaaaacacttgattattgactttgtata tctcctttggttttgaacagttttaaacaggtgtggtaatgaaatttgccaataaaatgaaaactggtactatatctt |
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| Transcript ID | habu1_s541_g02553.t2 |
| Definition | - |
>habu1_s541_g02553.t2 actgattggctaccggctatataggctgggacgggaggccggaggggctgcgttaagtccttgtttggctccgtttgttc cccctggactcaaggaatcccaaaggaacgcctttcactacagtatcagctgctgatctgcaggaaatgtatcatagcag caaggatgatgagatggtacaagctggacttcggggtgccctgccacttccagttgtaccccatgacagtcagaattccc agcacagagttgttcttggggagctgcgtgaaaatggacagtgtctaagatcctcttcccacggaccttccataatgaga ccgatgtctggatctgaaaatatttttcctatgactggcaaatatctaatgccaacctctgtgtcatccaagaaaagctt tactgtttacatagatgaagtggaagagagaagcaaaaataattttatagttgcagaagaagtggaacatagtatgtgtg aaaccgagaccagtacaataaaacctagccttcatctactactgaacttaagtacagtgtctccaatgttggtggataag tccctacaaaatgaagattgtgaggataacgaagtggacatgagtattgatgaatatgcagaagatattcataattattt aagagatgcagaagtaagatataggcccagaccatgctacatgaggaagcagcctgatataacctcagggatgcgtgcca tcttagtggattggctagcagaagttggtgaagaatacaagcttcagacagagacgttgtaccttgctgtgaactacttg gacagatttctttcttccatgtcggtcctcagaggaaaattgcaacttgtaggaacagcagcaattctcctagctgcgaa atatgaagaaatctaccccccagaagtagaagaatttgtgtacataacagatgacacttattccaaaaagcaactgttgc gaatggaacacctgcttcttaaagtacttgcttttgatttaactgtgccgaccatcaatcagttcctccttcaatattta caaagacacggtgtaagtcttaagacggagaactttgcgaggtacatagcagaattgagtctccttgaagcagacccatt cctgaagtatctgccctcacaaatggcagcagctgcttattgtctagcgaactacaccgtgaaccggcatttctggccag aaactcttgctgctttcactggatactcactgagtgagattgtgccttgcctaagtgacctacacaaagcatgcctcgat gcgcctcatcgacagcagcaagcaataagggaaaaatacaagctgactaaatatatgcaagtatcccttctggagccacc aactgttctacctctacattgaattgcagcatgcccagaaaaacacagaagctgaagcacttgcctcctgatcaatagag ttgatctggccaatttattatttttatagggcactgcaggtcacgtgtctaatctgctgctaaaactatttttagataac cgtctgatctttagctgtattgtattacaaggactcagtattgtagtttttatcataacctaaagacacttttaataaac atcttcgtcttcaaaagaaaaaacacttgattattgactttgtatatctcctttggttttgaacagttttaaacaggtgt ggtaatgaaatttgccaataaaatgaaaactggtactatatctt |
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Protein
| Protein ID | habu1_s541_g02553.t1 |
|---|---|
| Definition | - |
>habu1_s541_g02553.t1 MYHSSKDDEMVQAGLRGALPLPVVPHDSQNSQHRVVLGELRENGQCLRSSSHGPSIMRPMSGSENIFPMTGKYLMPTSVS SKKSFTVYIDEVEERSKNNFIVAEEVEHSMCETETSTIKPSLHLLLNLSTVSPMLVDKSLQNEDCEDNEVDMSIDEYAED IHNYLRDAEVRYRPRPCYMRKQPDITSGMRAILVDWLAEVGEEYKLQTETLYLAVNYLDRFLSSMSVLRGKLQLVGTAAI LLAAKYEEIYPPEVEEFVYITDDTYSKKQLLRMEHLLLKVLAFDLTVPTINQFLLQYLQRHGVSLKTENFARYIAELSLL EADPFLKYLPSQMAAAAYCLANYTVNRHFWY |
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| Protein ID | habu1_s541_g02553.t2 |
| Definition | - |
>habu1_s541_g02553.t2 MYHSSKDDEMVQAGLRGALPLPVVPHDSQNSQHRVVLGELRENGQCLRSSSHGPSIMRPMSGSENIFPMTGKYLMPTSVS SKKSFTVYIDEVEERSKNNFIVAEEVEHSMCETETSTIKPSLHLLLNLSTVSPMLVDKSLQNEDCEDNEVDMSIDEYAED IHNYLRDAEVRYRPRPCYMRKQPDITSGMRAILVDWLAEVGEEYKLQTETLYLAVNYLDRFLSSMSVLRGKLQLVGTAAI LLAAKYEEIYPPEVEEFVYITDDTYSKKQLLRMEHLLLKVLAFDLTVPTINQFLLQYLQRHGVSLKTENFARYIAELSLL EADPFLKYLPSQMAAAAYCLANYTVNRHFWPETLAAFTGYSLSEIVPCLSDLHKACLDAPHRQQQAIREKYKLTKYMQVS LLEPPTVLPLH |
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