Gene
| Gene Model ID | habu1_s5890_g16365 |
|---|---|
| Locus | habu1_scaffold5890 : 362586 ... 465254 : + |
| To GenomeBrowser | habu1_scaffold5890:362586..465254 |
| Genes list of scaffold | habu1_scaffold5890 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cadherin egf lag seven-pass g-type receptor 1 isoform x2 | GO:0001764 GO:0004930 GO:0005509 GO:0005634 GO:0005886 GO:0007156 GO:0007186 GO:0007266 GO:0007626 GO:0009952 GO:0016021 GO:0032956 GO:0042060 GO:0042472 GO:0045176 GO:0048105 GO:0060488 GO:0060489 GO:0060490 GO:0090179 GO:0090251 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5890_g16365.t1 | 4 | 1 | EGF | 106 | 158 | 4.5e-15 | 55.2 | 4.0e-06 | 0.0074 | 16.2 |
| habu1_s5890_g16365.t1 | 4 | 2 | EGF | 166 | 196 | 4.5e-15 | 55.2 | 9.1e-09 | 1.7e-05 | 24.6 |
| habu1_s5890_g16365.t1 | 4 | 3 | EGF | 206 | 234 | 4.5e-15 | 55.2 | 7.6e-10 | 1.4e-06 | 28.1 |
| habu1_s5890_g16365.t1 | 2 | 1 | Laminin_G_2 | 269 | 384 | 4.1e-37 | 127.0 | 1.2e-20 | 2.3e-17 | 63.2 |
| habu1_s5890_g16365.t1 | 2 | 1 | Laminin_G_1 | 269 | 388 | 2.3e-17 | 63.2 | 3.4e-13 | 6.3e-10 | 39.1 |
| habu1_s5890_g16365.t1 | 2 | 2 | Laminin_G_2 | 433 | 561 | 4.1e-37 | 127.0 | 1.1e-17 | 2.1e-14 | 53.6 |
| habu1_s5890_g16365.t1 | 2 | 2 | Laminin_G_1 | 433 | 564 | 2.3e-17 | 63.2 | 7.5e-07 | 0.0014 | 18.6 |
| habu1_s5890_g16365.t1 | 4 | 4 | EGF | 625 | 657 | 4.5e-15 | 55.2 | 5.3e-06 | 0.0099 | 15.8 |
| habu1_s5890_g16365.t1 | 1 | 1 | Laminin_EGF | 717 | 756 | 4.4e-08 | 32.9 | 2.4e-11 | 4.4e-08 | 32.9 |
| habu1_s5890_g16365.t1 | 1 | 1 | DUF3497 | 804 | 1060 | 0.0 | 198.3 | 0.0 | 0.0 | 197.5 |
| habu1_s5890_g16365.t1 | 1 | 1 | GPS | 1087 | 1134 | 1.4e-14 | 53.9 | 7.5e-18 | 1.4e-14 | 53.9 |
| habu1_s5890_g16365.t1 | 1 | 1 | 7tm_2 | 1141 | 1213 | 6.5e-08 | 31.9 | 6.8e-11 | 1.3e-07 | 31.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5890_g16365.t1 | gi|641754290|ref|XP_008177206.1| | PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s5890_g16365.t1 | gi|641754292|ref|XP_008177211.1| | PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1 isoform X2 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.5 |
| Venom grand-1 | 0.5 |
| Pit, infrared sensing | 1.5 |
| Nose | 1.1 |
| Brain-1 | 1.4 |
| Eye | 0.5 |
| fetal fibroblast | 2.6 |
| venom gland-2 | 2.8 |
| Brain-2 | 1.7 |
| Spleen | 1.5 |
| Lung | 1.0 |
| Liver | 0.3 |
| Kidney | 2.2 |
| Pancreas | 2.3 |
| Small intestine | 0.2 |
| Large intestine | 0.2 |
| Stomach | 3.7 |
| heart | 0.1 |
| ovary | 0.3 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s5890_g16365.t1 |
|---|---|
| Definition | - |
>habu1_s5890_g16365.t1 gtaagtcggggactttccctgcccgggagcgccgcgnnnnnnnttccgccccctgcgccggccgaggcgtagctggcaag cggcagagacggagcaggccgaccaccagctggcccagcccaagggagatggtattcacagtgttacagcattttgcacc ttaagggttacaatcatcactgatgacatgcttacgaatagcatcacagtacgactggaaaacatgtcccaagagaagtt tctctcccctctgctggctctctttgtggaaggtgtggctactgtactgtcaacaaccaaggagggcatttttgtcttca acattcaaaatgacacagatgttagctccaatattctgaatgtgacgttttctgccctacttcccggtggcattcgaaac aaattcttcccctctgaagaccttcaggagcagatctacctcaaccggaccctgctcacgctgatatctactcaacgagt gttgccttttgatgataacatttgtctgcgggaaccttgtgaaaactacatgaaatgtgtatctgtactgaaatttgaca gctctgcaccatttattagctcaaatactgtacttttccgacccatacaccctatcaatggtctgaggtgtcgctgtccc cctgggtttactggtgactattgtgaaacagagattgacctctgctattctaacccatgtggaaacaatggcctttgtcg aagtcgagagggaggctatacttgtgaatgttacgaagactacactggagaatattgtgaagtgaatgctcgctcaggac gctgtgcacccggagtctgcaagaacggggggacatgtgttaatctgctcataggaggcttcaaatgtgaatgtccccct ggtgaatatgagagaccttattgtgagatgaccacaagaagtttccctccagagtcatttgtcaccttcaagggattaag gcagcgcttccatttcactgtatctctcatgtttgcaacaagggaaaggaatgctttgcttctctataatggacgtttta acgagaaacatgattttattgctcttgagatcattgaagaacagatccagctaacgttttctgcaggggagaaggtggct gtagtaactgtggacgattgtgataccgcagtggctgtgcgctttggaagtctcattggaaactactcctgtgctgctca gggaacacagtccggctccaaaaagtcattggatttaactggccctctgctgcttggaggtgttcccaatttacctgaag attttcctgtacataacaggcagttcgttggttgtatgaggaatctctccatagacagcaagcccgttgatatggccagc tacatagccaataatggcacacttgcagcaatgtcttttcctcaacggttcactggggaaagcatcatcacctggaataa ccttgatatcactatttctataccatggtacattggcctcatgtttagaactcgcaaggttaacggtgtgttaatgcaag ccattgcgggagtatcatctaagattaatatacagatactgaataaatatgtggtatttgaggtctatgatggactgaat caggtggccagtttgaggatgacccaggtacggatcaatgatggtgaatggcatcatttgttaatagagttgaagagtgc aaaagatggcaaagacatcaagtatcttgcagttgtgtccttggattatggcatgtatcagagcactgtacagattggaa atcagttacctggactaaaaatgaaaagcatcattgtaggaggtgtctctggagatctagtctctgtgcagcaaggcttc tatggctgtctacagggagtgaggatgggggaaacatctacaaatgttgctacattgaacatgaaacaggcagtcaagat taacatcacggatggctgtgaaatagacaatccttgtgattctaactcttgtccccttcacagctattgtagtgatgact gggacagctattcatgtatctgtgacccagggtactttgggacggactgtattgatgtttgtagtctgaacccctgtgaa catgtctctacttgtattcataaaccaagctcttcccacgggtatacctgtgaatgtggacaaagttattatggacagta ctgtgaaagcaaaattgatttaccttgtcccagaggctggtggggaaatcctatttgtgggccctgtaattgtgagatca gtaaaggatttgatcctgactgcaataagacaaatggagcctgtcgatgtaagaaaaactattaccgaccacagaacagt gactcctgttatccatgtgattgtttcccttctggttcccacactcgctcttgtgacatggaaactgggcaatgtccctg caaatcaggcgtgattggacgacagtgcaatcgctgtgataatccctttgctgaagttacacttcatggatgtgaaggaa acgctgttcggcattgtagcagtgagaaaggctggctttcccctgaactttttaactgtactaccgttgactttgtgact cttaaaatcatgaatgagaagtttctccacaatgagacaaaaatggacagtgctaagtcggtgcagatagtgaaagtgct tcaaaatgccacaaaccacacaagttccttctatggaaatgatgtgcggacagcctatcagatgatgatcagggtgttgc agtatgagagccagcaacaggggtttgatttggctgcaacaagggatgtggaatttaatgagaatatcataaaaacagga agtgccttactggatcctcgcacaaaagacctttgggaacacatccaaaggacagaagggggtacagctcacttgctgaa atactatgaagattattttcacaatttggcaaagaacatgaaaagtacctacatgaaaccttttgttatcattgctgcaa acatgattattgctgtcgacatatttgaaaagtctaattttacgggagctagagtaccacattttagtgcaatcaaagaa gattatccaaaagatttggaatcgtctgttttgtttcctgaaactttactcaaaacctctatcacaaaagtgggtcctac aataaagccttcaaactatggaatgttattgaagatggaggatgagattgtaaataataaaaatatacatgccaaaagac aacgtcgccatccagagaattccagcctacatgctgttggcatggtgattatatatcgaaccttgggacatcttctgcct gagaactatgatcctgaccgaaggagtttaaggttacccaaccggcccatcattaatactccagtaaccagcgtaatcat ttatagagatggaaattctttgcctaatctactggacatcccaattaggattgagcatgttatgctgaatacagaggaga gaacaaagcctgtttgtgtgttctggaaccattcaattgcaactagagaagcaggaggctggtcttccaaagggtgtgaa ctgttttctcggcgccaaaaccgtgttatttgtcaatgtaaccacatgaccagttttgcagtcctgatggatatttcaaa acgtgaaatcaacattgtaatcttcatcttagcagtgaaagcatcatgtaaacgaaggcagcgttcactggagaaaactg gtatcatctctgtattgaggactgccttcttcctcctcctgttggtcagtgcaacttggttactgggtctgatggcagta aatagtgacataatgacctttcactacatgtttgctatctttagctgcttacagggcctggtcatctttttcttccactg tatattcaacaaggaagtcaggaagcatttgaagaatacattcagtggaaagaagtcgtttccagatgactccacgacaa ctagagccaccctgttaactcggtctctgaattgcaacgatacgtatattgaagaaccaaacatgtatcgaaccacaatc ggggaatccaccgtctccctagaaagcaccgtcagagatgaagctgcccagaaacacagcatatcaagtcaagcaagagc tggtaatcctgaaggagattcctccatcttccaaaggaagccatcaaaatccaatgagcgtgattctgattctgacagtg aactgtcccttgatgaacacagcagttcgtacgcttcctctcactcgtcagatagtgaggaagatgtgatagacgtggag aagaaatggaacactggcactttgaaaaacaatgagcggatcccagtccacagcactcctaaagctgatacggtgcccaa ccatgtgaaaccctactggccatctgagggcatcgatgcaagtgatgaggaagagccaaatgcaaaacaaaaactgaagg tggaaacaaaggttaatgtagaactacatcaggaaaatcaagtgaatcacagcagtgaaatacctccggaaaaagaggac gagggacagcaaaaggagagtaaaccactcactcatcaaaaccatcaaccaccagaacagaggaaaggcatattgaaaaa taaaatcacctaccctcctccattagtggacaaaaatatgaagaatcgactaagagaaaaattgtcagactatcatcaga ctacaatctcacctagaacaacttctgttgggactaacaatggtgttcgctccacttcagactctggagtaacaataaaa aacccaagaagagaaaatcctccagaacagatgaatggcttagccatgaatgtccacatgggaacaataacagctgagaa taactcggattctgagtgagtgctaagtctgcatgtttaccatgcttttcccactgttgctatttctcttgagtttctgg tgcttatttctttccaaagatttaccatttaattctttcaatggcttgttttggacattcattcaggaatcagcatcaga accatctgttcttccctttgcttcttctcctctatttccctttcatgtccttcaacactttccacattgctagcttgaaa cactttttgtgacatctgagtcacaaaatctgatttagtataatctcggtgatctaatcggataaactcgatttgtgttc tcaaactt |
|
Protein
| Protein ID | habu1_s5890_g16365.t1 |
|---|---|
| Definition | - |
>habu1_s5890_g16365.t1 MLTNSITVRLENMSQEKFLSPLLALFVEGVATVLSTTKEGIFVFNIQNDTDVSSNILNVTFSALLPGGIRNKFFPSEDLQ EQIYLNRTLLTLISTQRVLPFDDNICLREPCENYMKCVSVLKFDSSAPFISSNTVLFRPIHPINGLRCRCPPGFTGDYCE TEIDLCYSNPCGNNGLCRSREGGYTCECYEDYTGEYCEVNARSGRCAPGVCKNGGTCVNLLIGGFKCECPPGEYERPYCE MTTRSFPPESFVTFKGLRQRFHFTVSLMFATRERNALLLYNGRFNEKHDFIALEIIEEQIQLTFSAGEKVAVVTVDDCDT AVAVRFGSLIGNYSCAAQGTQSGSKKSLDLTGPLLLGGVPNLPEDFPVHNRQFVGCMRNLSIDSKPVDMASYIANNGTLA AMSFPQRFTGESIITWNNLDITISIPWYIGLMFRTRKVNGVLMQAIAGVSSKINIQILNKYVVFEVYDGLNQVASLRMTQ VRINDGEWHHLLIELKSAKDGKDIKYLAVVSLDYGMYQSTVQIGNQLPGLKMKSIIVGGVSGDLVSVQQGFYGCLQGVRM GETSTNVATLNMKQAVKINITDGCEIDNPCDSNSCPLHSYCSDDWDSYSCICDPGYFGTDCIDVCSLNPCEHVSTCIHKP SSSHGYTCECGQSYYGQYCESKIDLPCPRGWWGNPICGPCNCEISKGFDPDCNKTNGACRCKKNYYRPQNSDSCYPCDCF PSGSHTRSCDMETGQCPCKSGVIGRQCNRCDNPFAEVTLHGCEGNAVRHCSSEKGWLSPELFNCTTVDFVTLKIMNEKFL HNETKMDSAKSVQIVKVLQNATNHTSSFYGNDVRTAYQMMIRVLQYESQQQGFDLAATRDVEFNENIIKTGSALLDPRTK DLWEHIQRTEGGTAHLLKYYEDYFHNLAKNMKSTYMKPFVIIAANMIIAVDIFEKSNFTGARVPHFSAIKEDYPKDLESS VLFPETLLKTSITKVGPTIKPSNYGMLLKMEDEIVNNKNIHAKRQRRHPENSSLHAVGMVIIYRTLGHLLPENYDPDRRS LRLPNRPIINTPVTSVIIYRDGNSLPNLLDIPIRIEHVMLNTEERTKPVCVFWNHSIATREAGGWSSKGCELFSRRQNRV ICQCNHMTSFAVLMDISKREINIVIFILAVKASCKRRQRSLEKTGIISVLRTAFFLLLLVSATWLLGLMAVNSDIMTFHY MFAIFSCLQGLVIFFFHCIFNKEVRKHLKNTFSGKKSFPDDSTTTRATLLTRSLNCNDTYIEEPNMYRTTIGESTVSLES TVRDEAAQKHSISSQARAGNPEGDSSIFQRKPSKSNERDSDSDSELSLDEHSSSYASSHSSDSEEDVIDVEKKWNTGTLK NNERIPVHSTPKADTVPNHVKPYWPSEGIDASDEEEPNAKQKLKVETKVNVELHQENQVNHSSEIPPEKEDEGQQKESKP LTHQNHQPPEQRKGILKNKITYPPPLVDKNMKNRLREKLSDYHQTTISPRTTSVGTNNGVRSTSDSGVTIKNPRRENPPE QMNGLAMNVHMGTITAENNSDSE |
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