Gene
| Gene Model ID | habu1_s5890_g16366 |
|---|---|
| Locus | habu1_scaffold5890 : 469759 ... 494805 : - |
| To GenomeBrowser | habu1_scaffold5890:469759..494805 |
| Genes list of scaffold | habu1_scaffold5890 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mitochondrial trna-specific 2-thiouridylase 1 | EC:2.8.1.0 GO:0005739 GO:0008033 GO:0016783 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5890_g16366.t3 | 1 | 1 | ThiI | 7 | 49 | 1.6e-06 | 27.6 | 1.1e-09 | 2.8e-06 | 26.9 |
| habu1_s5890_g16366.t3 | 2 | 1 | tRNA_Me_trans | 8 | 237 | 0.0 | 361.1 | 0.0 | 0.0 | 291.2 |
| habu1_s5890_g16366.t3 | 2 | 2 | tRNA_Me_trans | 240 | 329 | 0.0 | 361.1 | 1.7e-22 | 4.1e-19 | 68.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5890_g16366.t3 | gi|674071516|ref|XP_008842897.1| | PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2 [Nannospalax galili] | 0.0 |
| habu1_s5890_g16366.t3 | gi|533128887|ref|XP_005379569.1| | PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Chinchilla lanigera] | 0.0 |
| habu1_s5890_g16366.t3 | gi|625224712|ref|XP_007651905.1| | PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1 [Cricetulus griseus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.7 |
| Venom grand-1 | 0.8 |
| Pit, infrared sensing | 1.9 |
| Nose | 1.7 |
| Brain-1 | 1.4 |
| Eye | 1.5 |
| fetal fibroblast | 6.0 |
| venom gland-2 | 1.9 |
| Brain-2 | 0.8 |
| Spleen | 1.9 |
| Lung | 1.3 |
| Liver | 2.8 |
| Kidney | 2.1 |
| Pancreas | 3.5 |
| Small intestine | 2.1 |
| Large intestine | 1.5 |
| Stomach | 3.0 |
| heart | 5.2 |
| ovary | 2.2 |
| cheek muscle | 4.8 |
Transcript
| Transcript ID | habu1_s5890_g16366.t1 |
|---|---|
| Definition | - |
>habu1_s5890_g16366.t1 ggccggccttgaggcagcgaagcgagaccatgatgggggccgctcgtcggcacgtggtgtgcgccatgtcgggcggggtg gacagcgccgtggcggcgctgctgctgcggcgacgaggatatgaggtgactggggtgttcatgaacaactgggacgtggt ggatgaaaagggaatttgtcaaggcaatcaagattgtgaagatgcttataaagtgtgtcagatactcaatattccatttc gccaagtttcctatgttaaagaatattggaatgaagtgtttagctaccttttaaatgaatacgaagttggacggacacct aaccctgatattatatgtaataaatacataaaattcaattatttcctacactatgctatggataacattggagctgatgc aatagcaactggacactatgcaaggacctccctggaagaccatgaagtttttcagcaaaaatacaagcaaagaccaccag gacttttcagaaatagatttgaaataagaaacactgtcaaactgcttcagggagctgatcacaataaagaccagaccttc tttctcagccagatttctcaagaagctttggagaaaaccatttttcccctcggagacttaacaaaagactttgtgaagaa gatagctgcagaacatcagctttaccatgtgttgaaaaaaaaagagagcatgggcctctgttttgttggtaaaagagatt tttcagagtttcttcttgagtatctgcaaccacgtccaggaaattttgtctccattgaagatggcaaagttattggaaca caccaaggttgcttcttatatacgtttggccagaaagctaagctaaagaactgcagtaatgcatggtttgtcgtagataa aaatatagcctctggggaagtttttgtggcgcccggcagggatcaccctgcgctctacagggaccttttacggacaagca gagtgcactggatcgctgaggatccacctgcagaactcattcacaacaaaatgatggagtgtaatttccgcttcctacac ttgatggcgctagtaccttgtacgttaaccctaaatcaagatggatcagtatggttgactctggctaagccaatcaggga tcttacagcagggcagtttgctgttttctacaagggagatgaatgcctaggcagtggcatgattctgagactggggcctt cggtttttactttgcaacagggcaagaacagagagactaccggtgtgaacataacagctgacgaggttagaccagtggtt ctcaacctttttaatgccgcgaccccaaccggtcgtaagtcgaggactaaaccggtcataagtcgaggactaaaccggtc gtaagtcgaggactaaaccggtcataagtcgaggactaaaccggtcgatgcttgttttagtgtcattttgttcttggctt tcatagcattctgtagataattttgattttatataaaaccacagcatgtaaataataaattcacaaagtgtcattttatg gaaataaatggttgtcataaaaatacaaataaattcaaaactttaatttactgtt |
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| Transcript ID | habu1_s5890_g16366.t2 |
| Definition | - |
>habu1_s5890_g16366.t2 ggccggccttgaggcagcgaagcgagaccatgatgggggccgctcgtcggcacgtggtgtgcgccatgtcgggcggggtg gacagcgccgtggcggcgctgctgctgcggcgacgaggatatgaggtgactggggtgttcatgaacaactgggacgtggt ggatgaaaagggaatttgtcaaggcaatcaagattgtgaagatgcttataaagtgtgtcagatactcaatattccatttc gccaagtttcctatgttaaagaatattggaatgaagtgtttagctaccttttaaatgaatacgaagttggacggacacct aaccctgatattatatgtaataaatacataaaattcaattatttcctacactatgctatggataacattggagctgatgc aatagcaactggacactatgcaaggacctccctggaagaccatgaagtttttcagcaaaaatacaagcaaagaccaccag gacttttcagaaatagatttgaaataagaaacactgtcaaactgcttcagggagctgatcacaataaagaccagaccttc tttctcagccagatttctcaagaagctttggagaaaaccatttttcccctcggagacttaacaaaagactttgtgaagaa gatagctgcagaacatcagctttaccatagcatgggcctctgttttgttggtaaaagagatttttcagagtttcttcttg agtatctgcaaccacgtccaggaaattttgtctccattgaagatggcaaagttattggaacacaccaaggttgcttctta tatacgtttggccagaaagctaagctaaagaactgcagtaatgcatggtttgtcgtagataaaaatatagcctctgggga agtttttgtggcgcccggcagggatcaccctgcgctctacagggaccttttacggacaagcagagtgcactggatcgctg aggatccacctgcagaactcattcacaacaaaatgatggagtgtaatttccgcttcctacacttgatggcgctagtacct tgtacgttaaccctaaatcaagatggatcagtatggttgactctggctaagccaatcagggatcttacagcagggcagtt tgctgttttctacaagggagatgaatgcctaggcagtggcatgattctgagactggggccttcggtttttactttgcaac agggcaagaacagagagactaccggtgtgaacataacagctgacgaggttagaccagtggttctcaacctttttaatgcc gcgaccccaaccggtcgtaagtcgaggactaaaccggtcataagtcgaggactaaaccggtcgtaagtcgaggactaaac cggtcataagtcgaggactaaaccggtcgatgcttgttttagtgtcattttgttcttggctttcatagcattctgtagat aattttgattttatataaaaccacagcatgtaaataataaattcacaaagtgtcattttatggaaataaatggttgtcat aaaaatacaaataaattcaaaactttaatttactgtt |
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| Transcript ID | habu1_s5890_g16366.t3 |
| Definition | - |
>habu1_s5890_g16366.t3 ggccggccttgaggcagcgaagcgagaccatgatgggggccgctcgtcggcacgtggtgtgcgccatgtcgggcggggtg gacagcgccgtggcggcgctgctgctgcggcgacgaggatatgaggtgactggggtgttcatgaacaactgggacgtggt ggatgaaaagggaatttgtcaaggcaatcaagattgtgaagatgcttataaagtgtgtcagatactcaatattccatttc gccaagtttcctatgttaaagaatattggaatgaagtgtttagctaccttttaaatgaatacgaagttggacggacacct aaccctgatattatatgtaataaatacataaaattcaattatttcctacactatgctatggataacattggagctgatgc aatagcaactggacactatgcaaggacctccctggaagaccatgaagtttttcagcaaaaatacaagcaaagaccaccag gacttttcagaaatagatttgaaataagaaacactgtcaaactgcttcagggagctgatcacaataaagaccagaccttc tttctcagccagatttctcaagaagctttggagaaaaccatttttcccctcggagacttaacaaaagactttgtgaagaa gatagctgcagaacatcagctttaccatgtgttgaaaaaaaaagagagcatgggcctctgttttgttggtaaaagagatt tttcagagtttcttcttgaggcgcccggcagggatcaccctgcgctctacagggaccttttacggacaagcagagtgcac tggatcgctgaggatccacctgcagaactcattcacaacaaaatgatggagtgtaatttccgcttcctacacttgatggc gctagtaccttgtacgttaaccctaaatcaagatggatcagtatggttgactctggctaagccaatcagggatcttacag cagggcagtttgctgttttctacaagggagatgaatgcctaggcagtggcatgattctgagactggggccttcggttttt actttgcaacagggcaagaacagagagactaccggtgtgaacataacagctgacgaggttagaccagtggttctcaacct ttttaatgccgcgaccccaaccggtcgtaagtcgaggactaaaccggtcataagtcgaggactaaaccggtcgtaagtcg aggactaaaccggtcataagtcgaggactaaaccggtcgatgcttgttttagtgtcattttgttcttggctttcatagca ttctgtagataattttgattttatataaaaccacagcatgtaaataataaattcacaaagtgtcattttatggaaataaa tggttgtcataaaaatacaaataaattcaaaactttaatttactgtt |
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Protein
| Protein ID | habu1_s5890_g16366.t1 |
|---|---|
| Definition | - |
>habu1_s5890_g16366.t1 MMGAARRHVVCAMSGGVDSAVAALLLRRRGYEVTGVFMNNWDVVDEKGICQGNQDCEDAYKVCQILNIPFRQVSYVKEYW NEVFSYLLNEYEVGRTPNPDIICNKYIKFNYFLHYAMDNIGADAIATGHYARTSLEDHEVFQQKYKQRPPGLFRNRFEIR NTVKLLQGADHNKDQTFFLSQISQEALEKTIFPLGDLTKDFVKKIAAEHQLYHVLKKKESMGLCFVGKRDFSEFLLEYLQ PRPGNFVSIEDGKVIGTHQGCFLYTFGQKAKLKNCSNAWFVVDKNIASGEVFVAPGRDHPALYRDLLRTSRVHWIAEDPP AELIHNKMMECNFRFLHLMALVPCTLTLNQDGSVWLTLAKPIRDLTAGQFAVFYKGDECLGSGMILRLGPSVFTLQQGKN RETTGVNITADEVRPVVLNLFNAATPTGRKSRTKPVISRGLNRS |
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| Protein ID | habu1_s5890_g16366.t2 |
| Definition | - |
>habu1_s5890_g16366.t2 MMGAARRHVVCAMSGGVDSAVAALLLRRRGYEVTGVFMNNWDVVDEKGICQGNQDCEDAYKVCQILNIPFRQVSYVKEYW NEVFSYLLNEYEVGRTPNPDIICNKYIKFNYFLHYAMDNIGADAIATGHYARTSLEDHEVFQQKYKQRPPGLFRNRFEIR NTVKLLQGADHNKDQTFFLSQISQEALEKTIFPLGDLTKDFVKKIAAEHQLYHSMGLCFVGKRDFSEFLLEYLQPRPGNF VSIEDGKVIGTHQGCFLYTFGQKAKLKNCSNAWFVVDKNIASGEVFVAPGRDHPALYRDLLRTSRVHWIAEDPPAELIHN KMMECNFRFLHLMALVPCTLTLNQDGSVWLTLAKPIRDLTAGQFAVFYKGDECLGSGMILRLGPSVFTLQQGKNRETTGV NITADEVRPVVLNLFNAATPTGRKSRTKPVISRGLNRS |
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| Protein ID | habu1_s5890_g16366.t3 |
| Definition | - |
>habu1_s5890_g16366.t3 MMGAARRHVVCAMSGGVDSAVAALLLRRRGYEVTGVFMNNWDVVDEKGICQGNQDCEDAYKVCQILNIPFRQVSYVKEYW NEVFSYLLNEYEVGRTPNPDIICNKYIKFNYFLHYAMDNIGADAIATGHYARTSLEDHEVFQQKYKQRPPGLFRNRFEIR NTVKLLQGADHNKDQTFFLSQISQEALEKTIFPLGDLTKDFVKKIAAEHQLYHVLKKKESMGLCFVGKRDFSEFLLEAPG RDHPALYRDLLRTSRVHWIAEDPPAELIHNKMMECNFRFLHLMALVPCTLTLNQDGSVWLTLAKPIRDLTAGQFAVFYKG DECLGSGMILRLGPSVFTLQQGKNRETTGVNITADEVRPVVLNLFNAATPTGRKSRTKPVISRGLNRS |
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