Gene
| Gene Model ID | habu1_s5910_g16410 |
|---|---|
| Locus | habu1_scaffold5910 : 280526 ... 395812 : + |
| To GenomeBrowser | habu1_scaffold5910:280526..395812 |
| Genes list of scaffold | habu1_scaffold5910 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lim homeobox transcription factor 1-alpha-like | GO:0005634 GO:0006355 GO:0008270 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5910_g16410.t1 | 2 | 1 | LIM | 63 | 118 | 9.0e-31 | 105.7 | 9.2e-18 | 2.7e-14 | 52.9 |
| habu1_s5910_g16410.t1 | 2 | 2 | LIM | 122 | 179 | 9.0e-31 | 105.7 | 1.5e-19 | 4.3e-16 | 58.7 |
| habu1_s5910_g16410.t1 | 1 | 1 | Homeobox | 219 | 275 | 6.4e-18 | 64.1 | 4.9e-21 | 1.5e-17 | 62.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5910_g16410.t1 | gi|637320370|ref|XP_008112649.1| | PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis carolinensis] | 0.0 |
| habu1_s5910_g16410.t1 | gi|557281222|ref|XP_006023580.1| | PREDICTED: LIM homeobox transcription factor 1-alpha-like [Alligator sinensis] | 0.0 |
| habu1_s5910_g16410.t1 | gi|694856452|ref|XP_009469814.1| | PREDICTED: LIM homeobox transcription factor 1-alpha-like [Nipponia nippon] | 0.0 |
| habu1_s5910_g16410.t1 | gi|686608357|ref|XP_009280751.1| | PREDICTED: LIM homeobox transcription factor 1-alpha-like [Aptenodytes forsteri] | 0.0 |
| habu1_s5910_g16410.t1 | gi|729741739|ref|XP_010567156.1| | PREDICTED: LIM homeobox transcription factor 1-alpha-like [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.0 |
| Brain-1 | 0.0 |
| Eye | 0.0 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.5 |
| Spleen | 0.0 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.1 |
| ovary | 0.3 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s5910_g16410.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16410.t1 cggtcgtaagtcgaggactacccaaccggtcgtaagtcgaggactttccctgcctgggagcgccgcgcatgcgtggttcc gccccctgcgccggccaaggcgtagctggcaagcggcagagacggagcaggccgaccaccagctggcccagcccaaggga ggcctggaggatgaagactgaagaggccccctcttgtctgcagcaggccatgccagtcctgggctatggctcagaatcga aaatgcgggaggtttgtgctggttgcaacaccccaatctcagatcgcttcctgctgcgagtgaatgagcgctcctggcac gaaggctgtgtgaagtgtgctgcttgcctccagcctctctcgggaacatgctattgtcgcaacaggcagctctactgtaa gcatgactatgaaaagctcttccagaccaaatgcagcggttgcctcaaagctgtggctccttctgaattcatcatgcggg tgctggagaatgtctaccacgtccactgcttctcctgctgtgagtgtgagcggaggttgcagcgcggagatgagtttgtg ctgaaggaagggcagctgctttgccgcagcgactatgagaaggagagagaaatgctaagcgccatcagccctgcacccac tgagtcagtgaagagtgaagatgaggatgggagccacccacatggcaaaggaggagaggaaagcaaggatcacaagcgct ccaaacgcccacgtaccatcctcaccacgcagcagcgacgggcattcaaggcctcctttgaagtctcctccaaaccctgc cggaaggtaagggagacattagcggctgaaactggtttgactgtccgtgtagtgcaggtctggttccagaatcaaagagc caagatgaaaaagatagcccgccggcagcagcaacaacaacagcagcagcaacaggagcaagagcagttgggaaatcccc gtctaggggcagggaggggaaatggacgcagcagcagacagagcaatgaggacagcgaagatagcgccagtgtgcatgga atagatgggctcatggtaccttactccaggattgcccagcagcagttgcttcccttggatcagaacagctacagcacaga cttgtaccggcaaggactcaccccaccccagttgccgggagaccatcttcatccatacgattcggaaggtgttttccatg acatggacagcgacacgatcggccatttgggcgactgcctgctgtctgcggctgaggccaacctcctgcagacgcgagtg ggcaatccaattgacaggctgtactccatgcaaaactcctacttcacctcctgacccttggttcttccgcctgatatgag ccactctgggtgtagaaggggataaatggcatggagaggcaagaccga |
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Protein
| Protein ID | habu1_s5910_g16410.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16410.t1 MRGSAPCAGQGVAGKRQRRSRPTTSWPSPREAWRMKTEEAPSCLQQAMPVLGYGSESKMREVCAGCNTPISDRFLLRVNE RSWHEGCVKCAACLQPLSGTCYCRNRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRG DEFVLKEGQLLCRSDYEKEREMLSAISPAPTESVKSEDEDGSHPHGKGGEESKDHKRSKRPRTILTTQQRRAFKASFEVS SKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIARRQQQQQQQQQQEQEQLGNPRLGAGRGNGRSSRQSNEDSEDSA SVHGIDGLMVPYSRIAQQQLLPLDQNSYSTDLYRQGLTPPQLPGDHLHPYDSEGVFHDMDSDTIGHLGDCLLSAAEANLL QTRVGNPIDRLYSMQNSYFTS |
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