Gene
| Gene Model ID | habu1_s5910_g16415 |
|---|---|
| Locus | habu1_scaffold5910 : 568399 ... 591835 : - |
| To GenomeBrowser | habu1_scaffold5910:568399..591835 |
| Genes list of scaffold | habu1_scaffold5910 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lysophosphatidic acid receptor 2 isoform x2 | GO:0000187 GO:0007186 GO:0009986 GO:0016021 GO:0030139 GO:0030165 GO:0035025 GO:0070915 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5910_g16415.t1 | 1 | 1 | 7TM_GPCR_Srsx | 41 | 306 | 4.7e-10 | 39.0 | 8.0e-14 | 5.9e-10 | 38.7 |
| habu1_s5910_g16415.t1 | 1 | 1 | 7tm_1 | 47 | 292 | 9.1e-37 | 126.5 | 1.6e-40 | 1.2e-36 | 126.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5910_g16415.t1 | gi|602629094|ref|XP_007421477.1| | PREDICTED: lysophosphatidic acid receptor 2 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s5910_g16415.t1 | gi|327277000|ref|XP_003223254.1| | PREDICTED: lysophosphatidic acid receptor 2 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s5910_g16415.t1 | gi|637320334|ref|XP_008112644.1| | PREDICTED: lysophosphatidic acid receptor 2 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s5910_g16415.t1 | gi|591381169|ref|XP_007065122.1| | PREDICTED: lysophosphatidic acid receptor 2 [Chelonia mydas] | 0.0 |
| habu1_s5910_g16415.t1 | gi|557281110|ref|XP_006023525.1| | PREDICTED: lysophosphatidic acid receptor 2 isoform X1 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.4 |
| Venom grand-1 | 3.2 |
| Pit, infrared sensing | 3.4 |
| Nose | 4.8 |
| Brain-1 | 0.9 |
| Eye | 2.0 |
| fetal fibroblast | 0.5 |
| venom gland-2 | 6.0 |
| Brain-2 | 1.0 |
| Spleen | 0.9 |
| Lung | 1.1 |
| Liver | 0.1 |
| Kidney | 0.5 |
| Pancreas | 0.1 |
| Small intestine | 2.1 |
| Large intestine | 2.6 |
| Stomach | 0.9 |
| heart | 0.1 |
| ovary | 84.1 |
| cheek muscle | 0.9 |
Transcript
| Transcript ID | habu1_s5910_g16415.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16415.t1 gacacccctgctctatgacatgcattggttggggttcgttgtgttcactgggatcggcactttgctttcccatcctaaaa ggatgactagagaccccctacaaagtaaaagccgtcaccagcaatgttgctgtttttatcctgacaaataagaagctttt gtaaacaacaacaagccttggacagagcagaggacttgactctttgaaaagatgactgtgtgctattataatatgacagt agagttcttctataacaacagtggaaaagagctattccatgaatggagacccaaggatatcttggtggttgcccttggct tgacagtcagcatcattgtactgctcaccaatttgttggtcatcacagccattgttatcaacaagcgattccactatcct atctattatctcttggggaatctggctgcagctgatctttttgctgggattgcatacatgttcctgatgtttcacactgg cccaaggacagctaaactctctctgaagacttggtttatcaggcagagcctcttggacaccagcctgactgcctcggttg tcaaccttttggccattgcagtggagcgtcaccagacaattttcaccatgcagctccatagcaagatgtccaaccagagg gtaattattctcattggctgcatctggataacagccctgctactgggtcttatcccttcatatggctggcactgcttgtg tcagctgaatgattgctctacgatggctcctctctacagtcgcagatatttgaccttctgggcactttccaatctcttta tcttcctcatcatggtggttgtctatactcacattttcatctacgtcaagcggaagatggctcggatgtctaagcatact acatttcacccacgctacaaggaaactatgatcaacctcatcaagacggtcatcattatcctcagtgcctttgtgatttg ctggacgccagggcaggtggttcttctgctggacggccttggctgcaagagctgcaacgtgttggcagtggagaaatact tcctgttgctggcagagatcaattcactcatcaatgccatcatctactcctatcgggacaatgagatgcgaagcaccttc cggaagatcctttgctttgcttgctacagggtgccaaagtactcccctgcttcaatgaaatctagcaccatagagcatcg gatcctgtctcagaatgggcatccaatgatggactccacgctttaactttgcagtttcaagttgctctctgccgattgtc tgaagctgctggtttggatctgcaggtggcccttttgtacaaaactagtaaccaaggcctacagtggctacagcaggact ggacagttttattatctgtggactgcttggggatagagggctgcattcttgatctatagctccatgctgcaacggtgtgt gtgacctagcagaagctgttgtactgaaattcttgttgactgatgtctggaatacagtgactgtcagtcaactgagct |
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Protein
| Protein ID | habu1_s5910_g16415.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16415.t1 MTVCYYNMTVEFFYNNSGKELFHEWRPKDILVVALGLTVSIIVLLTNLLVITAIVINKRFHYPIYYLLGNLAAADLFAGI AYMFLMFHTGPRTAKLSLKTWFIRQSLLDTSLTASVVNLLAIAVERHQTIFTMQLHSKMSNQRVIILIGCIWITALLLGL IPSYGWHCLCQLNDCSTMAPLYSRRYLTFWALSNLFIFLIMVVVYTHIFIYVKRKMARMSKHTTFHPRYKETMINLIKTV IIILSAFVICWTPGQVVLLLDGLGCKSCNVLAVEKYFLLLAEINSLINAIIYSYRDNEMRSTFRKILCFACYRVPKYSPA SMKSSTIEHRILSQNGHPMMDSTL |
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