Gene
| Gene Model ID | habu1_s5910_g16420 |
|---|---|
| Locus | habu1_scaffold5910 : 723896 ... 757446 : + |
| To GenomeBrowser | habu1_scaffold5910:723896..757446 |
| Genes list of scaffold | habu1_scaffold5910 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| long-chain fatty acid transport protein 1 | EC:6.2.1.3 GO:0001579 GO:0001676 GO:0004467 GO:0005783 GO:0006646 GO:0006654 GO:0006656 GO:0006659 GO:0006661 GO:0009409 GO:0015245 GO:0015909 GO:0016021 GO:0031652 GO:0031957 GO:0032049 GO:0032868 GO:0033211 GO:0042803 GO:0071072 GO:0071902 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5910_g16420.t2 | 2 | 1 | AMP-binding | 82 | 265 | 0.0 | 238.3 | 8.7e-37 | 6.4e-33 | 113.7 |
| habu1_s5910_g16420.t2 | 2 | 2 | AMP-binding | 334 | 572 | 0.0 | 238.3 | 1.7e-39 | 1.2e-35 | 122.6 |
| habu1_s5910_g16420.t2 | 1 | 1 | AMP-binding_C | 580 | 655 | 9.4e-06 | 26.4 | 2.6e-09 | 1.9e-05 | 25.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5910_g16420.t2 | gi|564240542|ref|XP_006277103.1| | PREDICTED: long-chain fatty acid transport protein 1 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.3 |
| Venom grand-1 | 3.7 |
| Pit, infrared sensing | 14.1 |
| Nose | 10.2 |
| Brain-1 | 18.4 |
| Eye | 21.0 |
| fetal fibroblast | 3.0 |
| venom gland-2 | 2.6 |
| Brain-2 | 27.5 |
| Spleen | 3.7 |
| Lung | 4.7 |
| Liver | 2.4 |
| Kidney | 5.9 |
| Pancreas | 2.6 |
| Small intestine | 1.9 |
| Large intestine | 3.3 |
| Stomach | 1.9 |
| heart | 6.6 |
| ovary | 0.5 |
| cheek muscle | 7.4 |
Transcript
| Transcript ID | habu1_s5910_g16420.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16420.t1 cgggtgaaggggaacgaaggtgtcggaatctcaagtgcgaaggctgtaggcgcgagaatgcacacaattggggtttgtac tgcttcccttggctcactgggcctcatgcgattctttggtgtgtcctggacatggagtattgcagtcactttgggcattt atattggcagtggtgggtggaactttctccgcatcatctttaagacagccctgagagatttactaggactctcggtgctt ttgcgagtcaaatatgaactgtatcatcacaggaaagccaaaaataatattcccaagatattccagaaagtagtctggaa acatccagacaaagtggccttgatttatgaagctactgatgacaaatggacattccagcaactggatgaatattccaact gtgtggccaacttcttttaccagcaaggttttcgtgagggtgatgtaatcgctatcttcatggagaaccgaccagaattt gtaggcttctggttggggatggccaaagtgggtattgaggcagctctcatcaacttcaacttgcgtcttgactcattgac ttactgtgtgaaaacctcaggagcaaaagccatcatctttggtggggagctatcagaagcaatctctgaagtgaacggca tcctgggaaaaaatatgactaggttctgttccggagattttgtacctgaatcctgccctccagatactaagcacttggac cctctgctggcgcagacatcgaaatctcctccaactcatgtttcaaccaagggattagatgatcggctgttctacattta cacctctggaacaactggaatgccaaaagctgccattgtggtgcacagtagatattaccgaatttctgcttttggttatt acgcttacagagttacccaagatgacataatctataactgtctaccactgtaccactcagcagggaacatcatgggtatc ggccagtgcgtggttcatggtctgacggtagtgattaagaagaaattttctgctagtcgcttctgggatgactgtgtgaa atacaagtgtacaatcatccaatatatcggggagatttgcagatacctgctgaaccaaccagtgcgggaggcagaaaggc agcaccaggtgcggctagctattggaaacggcttgaggctcaccatttgggaagacttcacacggcgcttccgaatcaaa cagattggagaattctatggggcaactgagtgtaactgtagcattgctaatgtagatggaaaggtgggagcctgtggctt ccatagccggattttgcccaatgtatatcctatccgcttggtgaaagttaatgaggataccatggagctaatacgtggca caaatggactttgtatctcctgtcaaccaggagaacccggacttcttgtgggcaggataaaccaagaagaccccttgcgg agatttgatggctatgtcaatcagaatgcaactaacaagaaaatagcttataatgtcttccaaaaaggagatcaggctta tcttacaggagatgtcctagtgatggatgatctcggctatatgtacttcaaagaccgcagtggggatacattccgttggc gtggggagaacgtttccaccacagaagttgagggaatcctcagccatattctcagcaagacagatgtggccgtttatggg gtagaggtaccaggagtagaaggcaaggctggaatggcagctattgctgacccaaaagcaaaactgaatcctaacattct gtatttggagatacagaaagcattacctccatatgcacggcctatcttcctccgatttctgccacaggttgacaccacag gcactttcaagattcagaagacccgtttacaaagggaaggctacaatccacaccagatgtcagatcggttatactttttg gatgtgaaacttggcaagtacctaccaatagatgagtgcatttttgagaggatccaaactggaaaaatgtctctttgatt taattggtgagaagacgcataaagatcctgatgtcgaaaggtcttgttttggtagagaaatagacttgaataaataagca aaacaagattttaata |
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| Transcript ID | habu1_s5910_g16420.t2 |
| Definition | - |
>habu1_s5910_g16420.t2 cgggtgaaggggaacgaaggtgtcggaatctcaagtgcgaaggctgtaggcgcgagaatgcacacaattggggtttgtac tgcttcccttggctcactgggcctcatgcgattctttggtgtgtcctggacatggagtattgcagtcactttgggcattt atattggcagtggtgggtggaactttctccgcatcatctttaagacagccctgagagatttactaggactctcggtgctt ttgcgagtcaaatatgaactgtatcatcacaggaaagccaaaaataatattcccaagatattccagaaagtagtctggaa acatccagacaaagtggccttgatttatgaagctactgatgacaaatggacattccagcaactggatgaatattccaact gtgtggccaacttcttttaccagcaaggttttcgtgagggtgatgtaatcgctatcttcatggagaaccgaccagaattt gtaggcttctggttggggatggccaaagtgggtattgaggcagctctcatcaacttcaacttgcgtcttgactcattgac ttactgtgtgaaaacctcaggagcaaaagccatcatctttggtggggagctatcagaagcaatctctgaagtgaacggca tcctgggaaaaaatatgactaggttctgttccggagattttgtacctgaatcctgccctccagatactaagcacttggac cctctgctggcgcagacatcgaaatctcctccaactcatgtttcaaccaagggattagatgatcggctgttctacattta cacctctggaacaactggaatgccaaaagctgccattgtggtgcacagtaggctaggaatccccagtcacgacttagtct tagccaagagagacgtggtgaagattggctcttggtctttcgcggaaaggctaaatggtgatccatcaggtttgcagctt cctgcctggtccctcattgactgcttgttggaaactggcaggaattcacaagtcccagtcagatattaccgaatttctgc ttttggttattacgcttacagagttacccaagatgacataatctataactgtctaccactgtaccactcagcagggaaca tcatgggtatcggccagtgcgtggttcatggtctgacggtagtgattaagaagaaattttctgctagtcgcttctgggat gactgtgtgaaatacaagtgtacaatcatccaatatatcggggagatttgcagatacctgctgaaccaaccagtgcggga ggcagaaaggcagcaccaggtgcggctagctattggaaacggcttgaggctcaccatttgggaagacttcacacggcgct tccgaatcaaacagattggagaattctatggggcaactgagtgtaactgtagcattgctaatgtagatggaaaggtggga gcctgtggcttccatagccggattttgcccaatgtatatcctatccgcttggtgaaagttaatgaggataccatggagct aatacgtggcacaaatggactttgtatctcctgtcaaccaggagaacccggacttcttgtgggcaggataaaccaagaag accccttgcggagatttgatggctatgtcaatcagaatgcaactaacaagaaaatagcttataatgtcttccaaaaagga gatcaggcttatcttacaggagatgtcctagtgatggatgatctcggctatatgtacttcaaagaccgcagtggggatac attccgttggcgtggggagaacgtttccaccacagaagttgagggaatcctcagccatattctcagcaagacagatgtgg ccgtttatggggtagaggtaccaggagtagaaggcaaggctggaatggcagctattgctgacccaaaagcaaaactgaat cctaacattctgtatttggagatacagaaagcattacctccatatgcacggcctatcttcctccgatttctgccacaggt tgacaccacaggcactttcaagattcagaagacccgtttacaaagggaaggctacaatccacaccagatgtcagatcggt tatactttttggatgtgaaacttggcaagtacctaccaatagatgagtgcatttttgagaggatccaaactggaaaaatg tctctttgatttaattggtgagaagacgcataaagatcctgatgtcgaaaggtcttgttttggtagagaaatagacttga ataaataagcaaaacaagattttaata |
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Protein
| Protein ID | habu1_s5910_g16420.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16420.t1 MHTIGVCTASLGSLGLMRFFGVSWTWSIAVTLGIYIGSGGWNFLRIIFKTALRDLLGLSVLLRVKYELYHHRKAKNNIPK IFQKVVWKHPDKVALIYEATDDKWTFQQLDEYSNCVANFFYQQGFREGDVIAIFMENRPEFVGFWLGMAKVGIEAALINF NLRLDSLTYCVKTSGAKAIIFGGELSEAISEVNGILGKNMTRFCSGDFVPESCPPDTKHLDPLLAQTSKSPPTHVSTKGL DDRLFYIYTSGTTGMPKAAIVVHSRYYRISAFGYYAYRVTQDDIIYNCLPLYHSAGNIMGIGQCVVHGLTVVIKKKFSAS RFWDDCVKYKCTIIQYIGEICRYLLNQPVREAERQHQVRLAIGNGLRLTIWEDFTRRFRIKQIGEFYGATECNCSIANVD GKVGACGFHSRILPNVYPIRLVKVNEDTMELIRGTNGLCISCQPGEPGLLVGRINQEDPLRRFDGYVNQNATNKKIAYNV FQKGDQAYLTGDVLVMDDLGYMYFKDRSGDTFRWRGENVSTTEVEGILSHILSKTDVAVYGVEVPGVEGKAGMAAIADPK AKLNPNILYLEIQKALPPYARPIFLRFLPQVDTTGTFKIQKTRLQREGYNPHQMSDRLYFLDVKLGKYLPIDECIFERIQ TGKMSL |
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| Protein ID | habu1_s5910_g16420.t2 |
| Definition | - |
>habu1_s5910_g16420.t2 MHTIGVCTASLGSLGLMRFFGVSWTWSIAVTLGIYIGSGGWNFLRIIFKTALRDLLGLSVLLRVKYELYHHRKAKNNIPK IFQKVVWKHPDKVALIYEATDDKWTFQQLDEYSNCVANFFYQQGFREGDVIAIFMENRPEFVGFWLGMAKVGIEAALINF NLRLDSLTYCVKTSGAKAIIFGGELSEAISEVNGILGKNMTRFCSGDFVPESCPPDTKHLDPLLAQTSKSPPTHVSTKGL DDRLFYIYTSGTTGMPKAAIVVHSRLGIPSHDLVLAKRDVVKIGSWSFAERLNGDPSGLQLPAWSLIDCLLETGRNSQVP VRYYRISAFGYYAYRVTQDDIIYNCLPLYHSAGNIMGIGQCVVHGLTVVIKKKFSASRFWDDCVKYKCTIIQYIGEICRY LLNQPVREAERQHQVRLAIGNGLRLTIWEDFTRRFRIKQIGEFYGATECNCSIANVDGKVGACGFHSRILPNVYPIRLVK VNEDTMELIRGTNGLCISCQPGEPGLLVGRINQEDPLRRFDGYVNQNATNKKIAYNVFQKGDQAYLTGDVLVMDDLGYMY FKDRSGDTFRWRGENVSTTEVEGILSHILSKTDVAVYGVEVPGVEGKAGMAAIADPKAKLNPNILYLEIQKALPPYARPI FLRFLPQVDTTGTFKIQKTRLQREGYNPHQMSDRLYFLDVKLGKYLPIDECIFERIQTGKMSL |
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