Gene
| Gene Model ID | habu1_s5910_g16429 |
|---|---|
| Locus | habu1_scaffold5910 : 909726 ... 912945 : - |
| To GenomeBrowser | habu1_scaffold5910:909726..912945 |
| Genes list of scaffold | habu1_scaffold5910 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lysozyme milk isozyme-like | GO:0016798 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s5910_g16429.t1 | 1 | 1 | SLT | 1 | 50 | 1.9e-08 | 33.8 | 5.3e-12 | 2.6e-08 | 33.3 |
| habu1_s5910_g16429.t1 | 1 | 1 | Lys | 2 | 96 | 3.2e-35 | 120.8 | 7.0e-39 | 3.5e-35 | 120.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s5910_g16429.t1 | gi|602677520|ref|XP_007444208.1| | PREDICTED: LOW QUALITY PROTEIN: lysozyme C-1-like [Python bivittatus] | 3.0e-39 |
| habu1_s5910_g16429.t1 | gi|602642965|ref|XP_007444722.1| | PREDICTED: lysozyme C, milk isozyme-like [Python bivittatus] | 8.0e-39 |
| habu1_s5910_g16429.t1 | gi|327263810|ref|XP_003216710.1| | PREDICTED: lysozyme C, milk isozyme-like [Anolis carolinensis] | 9.0e-37 |
| habu1_s5910_g16429.t1 | gi|557281796|ref|XP_006023845.1| | PREDICTED: sperm acrosome membrane-associated protein 3-like [Alligator sinensis] | 1.0e-36 |
| habu1_s5910_g16429.t1 | gi|564232691|ref|XP_006260721.1| | PREDICTED: sperm acrosome membrane-associated protein 3-like [Alligator mississippiensis] | 2.0e-36 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.1 |
| Brain-1 | 0.0 |
| Eye | 0.6 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.4 |
| Brain-2 | 0.2 |
| Spleen | 0.0 |
| Lung | 229.9 |
| Liver | 0.7 |
| Kidney | 0.4 |
| Pancreas | 0.4 |
| Small intestine | 0.3 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.3 |
| ovary | 0.1 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s5910_g16429.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16429.t1 cagacattgtcctccaaggagcagcagcaatgaaggcattagtgctcaacctcctcttcctcttcattgcagtcattgaa gccaaacaatactccagatgtgaattcgctagacttctgaaatgaagtttcatggatggatatcatggctacagcttggg caattggatctgtatggcttatcatgagagtggctttaaaacccatgctgtgaatataaatgacaacggcagtcgtgact atgggatattccaaataaacagtcgctattggtgcaacaataacgagggccgtacaaataatggctgtaggaagccttgc agtgatttcttaaatgatgacatcacagatgatattgcttgtgctaagaaagttgtgcatgataaacaaaagatgaatgc ctggaggggctggcaaaaacactgccaaggaagagatctatcaaaatggactcagggctgcaacctctgagattggtgat tcttcatttctcttccttctcctgtgatgaaaatgatgctacttcttataaaacaaacatttaacaacttgattctatgc ttgtacctcacatgttgagatgaattgatttctttgcacacaaaggatgatttttaaaacatttctgggtaggaagaagg aatgagtttgctttttaaaatcttcaaaaattgcttcaataaaatgagtattatgcattatgacc |
|
Protein
| Protein ID | habu1_s5910_g16429.t1 |
|---|---|
| Definition | - |
>habu1_s5910_g16429.t1 MAYHESGFKTHAVNINDNGSRDYGIFQINSRYWCNNNEGRTNNGCRKPCSDFLNDDITDDIACAKKVVHDKQKMNAWRGW QKHCQGRDLSKWTQGCNL |
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