Gene
| Gene Model ID | habu1_s6078_g16665 |
|---|---|
| Locus | habu1_scaffold6078 : 169099 ... 173295 : - |
| To GenomeBrowser | habu1_scaffold6078:169099..173295 |
| Genes list of scaffold | habu1_scaffold6078 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: tubulin beta-4b chain | GO:0003725 GO:0003924 GO:0005200 GO:0005525 GO:0005634 GO:0005737 GO:0005874 GO:0007017 GO:0008152 GO:0030496 GO:0051258 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s6078_g16665.t1 | 2 | 1 | Tubulin | 3 | 53 | 0.0 | 184.9 | 1.3e-11 | 4.7e-08 | 33.1 |
| habu1_s6078_g16665.t1 | 2 | 2 | Tubulin | 55 | 185 | 0.0 | 184.9 | 0.0 | 7.14662e-44 | 150.2 |
| habu1_s6078_g16665.t1 | 1 | 1 | Tubulin_C | 224 | 345 | 0.0 | 170.1 | 0.0 | 0.0 | 169.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s6078_g16665.t1 | gi|525015821|ref|XP_005055486.1| | PREDICTED: LOW QUALITY PROTEIN: tubulin beta-4B chain [Ficedula albicollis] | 0.0 |
| habu1_s6078_g16665.t1 | gi|327290154|ref|XP_003229789.1| | PREDICTED: tubulin beta-4B chain [Anolis carolinensis] | 0.0 |
| habu1_s6078_g16665.t1 | gi|634865305|ref|XP_007945164.1| | PREDICTED: tubulin beta-4B chain isoform X1 [Orycteropus afer afer] | 0.0 |
| habu1_s6078_g16665.t1 | gi|346644707|ref|NP_001231027.1| | tubulin beta-4B chain [Cricetulus griseus] | 0.0 |
| habu1_s6078_g16665.t1 | gi|556995294|ref|XP_006001471.1| | PREDICTED: tubulin beta-4B chain-like isoform X2 [Latimeria chalumnae] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 16.4 |
| Venom grand-1 | 29.7 |
| Pit, infrared sensing | 21.9 |
| Nose | 38.4 |
| Brain-1 | 14.2 |
| Eye | 12.6 |
| fetal fibroblast | 57.4 |
| venom gland-2 | 17.6 |
| Brain-2 | 25.6 |
| Spleen | 9.0 |
| Lung | 18.8 |
| Liver | 11.7 |
| Kidney | 5.2 |
| Pancreas | 11.6 |
| Small intestine | 8.4 |
| Large intestine | 9.1 |
| Stomach | 8.2 |
| heart | 12.7 |
| ovary | 83.4 |
| cheek muscle | 8.0 |
Transcript
| Transcript ID | habu1_s6078_g16665.t1 |
|---|---|
| Definition | - |
>habu1_s6078_g16665.t1 aagagacaggaagctctcggctttcctatcccaaatccttcaatcagaggttctggttatttagcaccttccctaatagg atgctctttacctttttttccttcccagaacgggaggctctccagagattgggatgacacctcgaggacgcgacaatcac atttacgaagaagtggaataggagactcaccccggagatgggctgatgcgctgtatgaacttttcctcagtgtccttggg ctgcgaagtagctccttcggcagggaccacggggctaccctttggtcttcctattaaaccgtgctttaattcctcttagt ccgttgattttgctgcatgtgccacagaacccgtttcttgttagaagcttggcctgttctagaatgttgcattctgcagc cctccaaagaaaaagtcttttgaagttagcactattttaatgttaggattaaaaaggaaaaataacatgttcttaaaata tagtgcttcgcaagacagaaaatgcagctttattaagctggaaactgaactacataactgatccatcctgaaaggcatag tggagcgctgatcgctggcagtctccagctggtgctgcctggcccatgctttggcctctgcccagctggcctcttcattg ctgccttggcaggggacgatgggagtgcagttggggaatcctggaaggggagccaggggctagagaggaggcctagcagg cctgggacttgctttcactgcagcaactgaggacagaaaaaccagagtgcttcaaggcgtttggggcctgtttgcagcca cgggtttccattgtggaggatgctgtccgcgtgccctagagacgttgctaaggcaaccgagccccgttcctaagaagcgc cttgtttacggcgtccaccgcaatcgccacgccgataacgcagcgcgcggggagcttgcgcttttaacgtagcactgtta acgtagtcgccgtagtgaacaggttctcgcgccttcatttgcgcgggcgtttcccctacgaccgttactaggagacgcat ctctcagccgtcaattggaggtcgcgatcagtcattcaaatcacccaatagaagaggctccttcggtttttttctttttt tccgttggtagggagcacagagaaccaacgtacgtgagcaggaggaggagtttcggatgaccgttgaaacgttctagtag aaaattcgagggagaacgtcttcgcgctaaaaaacgttcaagcgcggggaggttttcggttaagactggcatctcgaacg cccaatcaatagcgcaatctaagtatttttgcccaatcgccattggcgaggcggatgacgagggaggtggagtgaggttg agacgacgcgcgcgactacgcggcgccgccccctttcttgcgcctcatatataaaggtgtgtccgttaccttgacgcagc tagtattcgtcgtgccgtcggccttgcttgtctcgctacccggaacggagagaagaggccgatcccgcccgtcggtttcg acgccatgagggagatcgtgcatttgcaagccggccagtgcggcaaccagatcggcgctaagttttgggaggtgatctcg gacgagcatggcatcgaccccaccggcacgtaccatggcgacagcgatctccagctcgagcgcatcaatgtctactacaa cgaggccaccggtcagagtggagcaggcaacaactgggccaagggccattacactgagggggctgagcttgtggactctg tgctggatgttgtaaggaaagaagccgaaagctgtgactgccttcagggtttccaactcacacattccctggggggtggc actggttctggcatggggacactcctgatcagcaagatccgtgaagagtatccagacaggattatgaacacttttagcgt tgtcccgtcccccaaagtgtcagatactgtggtcgagccctacaatgccactctctcagtccaccagctggtggagaata cagatgagacctattgtatcgataatgaggcactatatgacatttgtttccggaccctgaagctgaccactcctacctat ggcgatctcaatcacctggtgtcagccacaatgagcggggtgaccacttgtctgcggttcccaggccagctaaatgctga cctgcgcaagctggcggtcaacatggtcccctttcctcggctacatttttttatgcccggctttgctccgctgaccagcc gtgggagccagcagtatcgtgccctgacagtgcctgagctcacccaacagatgttcgatgccaagaacatgatggcagct tgcgatccccgccatgggcgctacctcacggtcgcagcggttttccgtgggcgcatgtcgatgaaggaggtggatgagca gatgctaaatgtccagaacaagaacagcagctactttgtggagtggatccccaataatgtgaagaccgccgtctgtgaca tccctccccgtggccttaagatgtcagccaccttcattggcaacagcactgccatccaggagctcttcaagcgcatctcc gagcagttcacggccatgttccgtcgcaaggccttcctgcactggtacactggggagggcatggatgagatggagttcac tgaggcggagagcaacatgaacgacctggtctccgagtaccagcagtaccaggatgccaccgctgaggaagagggtgagt ttgaagaggaagcagaggaagaagcagcttaagagatctggggggggggctgttacacctgtgtgt |
|
Protein
| Protein ID | habu1_s6078_g16665.t1 |
|---|---|
| Definition | - |
>habu1_s6078_g16665.t1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGQSGAGNNWAKGHYTEGAELVDSVL DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTD ETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP PRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFE EEAEEEAA |
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