Gene
| Gene Model ID | habu1_s6078_g16673 |
|---|---|
| Locus | habu1_scaffold6078 : 206206 ... 208958 : + |
| To GenomeBrowser | habu1_scaffold6078:206206..208958 |
| Genes list of scaffold | habu1_scaffold6078 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase rnf170-like | GO:0008152 GO:0008270 GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s6078_g16673.t1 | 1 | 1 | zf-C3HC4_3 | 187 | 241 | 6.8e-07 | 28.8 | 1.5e-09 | 1.9e-06 | 27.4 |
| habu1_s6078_g16673.t1 | 1 | 1 | zf-RING_2 | 189 | 239 | 1.1e-09 | 37.9 | 2.6e-12 | 3.3e-09 | 36.4 |
| habu1_s6078_g16673.t1 | 1 | 1 | zf-RING_5 | 189 | 240 | 5.2e-09 | 35.6 | 4.2e-12 | 5.2e-09 | 35.6 |
| habu1_s6078_g16673.t1 | 1 | 1 | zf-RING_UBOX | 190 | 236 | 1.6e-08 | 34.1 | 1.3e-11 | 1.6e-08 | 34.1 |
| habu1_s6078_g16673.t1 | 1 | 1 | zf-C3HC4_2 | 190 | 238 | 1.6e-07 | 31.1 | 3.3e-10 | 4.1e-07 | 29.9 |
| habu1_s6078_g16673.t1 | 1 | 1 | zf-C3HC4 | 190 | 238 | 3.8e-07 | 29.6 | 7.9e-10 | 9.7e-07 | 28.3 |
| habu1_s6078_g16673.t1 | 1 | 1 | zf-C3HC4_4 | 190 | 238 | 6.3e-06 | 25.9 | 1.4e-08 | 1.8e-05 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s6078_g16673.t1 | gi|513211919|ref|XP_004945816.1| | PREDICTED: uncharacterized protein LOC101749606 [Gallus gallus] | 0.0 |
| habu1_s6078_g16673.t1 | gi|527247179|ref|XP_005141917.1| | PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Melopsittacus undulatus] | 0.0 |
| habu1_s6078_g16673.t1 | gi|402895972|ref|XP_003911084.1| | PREDICTED: uncharacterized protein LOC101008347 [Papio anubis] | 2.0e-33 |
| habu1_s6078_g16673.t1 | gi|635069782|ref|XP_008003697.1| | PREDICTED: uncharacterized protein LOC103239574 [Chlorocebus sabaeus] | 2.0e-33 |
| habu1_s6078_g16673.t1 | gi|544491312|ref|XP_005580387.1| | PREDICTED: uncharacterized protein LOC102144825 [Macaca fascicularis] | 3.0e-33 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.0 |
| Venom grand-1 | 3.4 |
| Pit, infrared sensing | 1.3 |
| Nose | 3.4 |
| Brain-1 | 0.2 |
| Eye | 1.6 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 14.3 |
| Brain-2 | 0.2 |
| Spleen | 2.5 |
| Lung | 2.1 |
| Liver | 0.5 |
| Kidney | 0.9 |
| Pancreas | 11.1 |
| Small intestine | 4.3 |
| Large intestine | 2.6 |
| Stomach | 10.5 |
| heart | 0.5 |
| ovary | 0.5 |
| cheek muscle | 0.9 |
Transcript
| Transcript ID | habu1_s6078_g16673.t1 |
|---|---|
| Definition | - |
>habu1_s6078_g16673.t1 gagaatttgttctttttctcacaggggttccttgtgtttctctcgtccttccttgaaggaacaggtggggtcccccaaag cgaatcaggctgaggcatctgcacagggtcttctgctcctgcagcatgaaacagctggcttcacgggcagccaaagccag aggcacagccccgaggaaggaggtgctggcagagcggggggtgggggtggccgttaaggtcaaagccagacaggagccga gcctctaggcctgaccagcccagcctcagggcttctccaggtgcccagctctgagcgctccctccctgctttgctcccag ctctgctgctgctgtcccacagatgagcaaagaagcagaggccgggcctcgctgccgagtcaagctcctgactttgctcc ttcctgcctggaagtggcacacgggtgtcagtgtggtttggtgttgtggaacatggactgttaaaaaaacaagggtagag tttgtctccagaagcatcaacctcctggtctctgagtcggatctggcattcatggagactctgcgcaggagcgcccatgc gtcccagcagaaaaggggacagaaaccgaggccaatggggagacagactcagcctttctgccttaattatactcccagca gtgattcctgtgagtagcagagaagccccctcgctgcaaacaggcaacgcttagaatggctgctgctcagagtaacatcc cgcctcctccagaaaaagatggcccagcccgaagaaggggagcaacccagctcctccaacagaaacgcagcagcctcgtg ctgtggcgtcatattggcacggaggaacagaagccgcgcctgccagcatctgtggagccacctggatggtcctacctgct cggccggccccagccccgccccctggccctggcctgcagccgacagggagctgctccgccctcgattcagagtctcggtt gtcgcaagttgagagaggatcgcagctgtcgccagccttcctgttggcaaccatttgggtcgggctgctcagctggaaac catagggctgtggagcccgtcctccggaggcaagcgaggcagcagctcttcctgggcaggagtttcaagctaggcgagat ggaagcgtgccatgtcccacgggcagctttggccccaagaagcggaagacagcagctgctgatcctcctccggactgcct taccttgaagctgggagcaggacgggcatggggacaatcccctcggattcggcccttgggacagagccaatcgttgtggt tcaccccgagaaggaggtgtgtgtgttcagggctgcaccttccttgggcaactttcggcaaggcttcctggaggaagagc ttatagaggaggaggagaaggaggatggcagtgagggcaaagggcccaggagtgggctagctgcaaatgacctctctgga tccagagaggaggaggagccaagcatcgcttccctcgtttggcacccaaaagaaggcctgggtgagctaggagtggattc tggagagtctcttgcgcccgggaggctttctcctgtgaccaaagaggccagtggcacagctgggcttgcagcacttgggc cagaggaggaggaggaggaggagagctgcccattgggaaatgcgccccaactacctttgggggaagaggcggaggagatg gaaggggtttgcctgctggggagcaaagctctgggcccaggcaggagtgcccagggggccctggcacaatcctgctgcat ccaggccgaggaccccgtgggggacgagcaggagtgccccatctgtacggagctctatgaccaagattaccgcaagccgg ccttgctcaactgcagccacgtgctctgtggccagtgcctgcaggccattctgcaggcgggcagtgcggctgacattggc cgcgtgcgatgccccatctgccgccagaagacacccatgatggagtgggagatctgcaagctgcaagaggagctgctcct gctgagcactgcccaagtcccggcctctgcgcctccggccttcagtccgctgccgccccggcagccagggttctgggggg gcctggagcaccacttccacgtgcgcttccacaccagccgcgtggtgggcttcttcccctgcctccgctacccagcctgc ctggtgggcggcctggcagagctggagcgccgctacccctggtgctaccggacggctctcttggctctggccgcagcgga gatgctgagcctcttgttggtcttcctgcccatccttttgctgctgctgctcttcctcatcctggacaagtagggctcct gctggccggacttggcccctgggggctgcgagcgagggtggggacctccagcactgcctgcaagcaaggaggggcccgaa cgccgtgctggcctctgcatggcctccctgagaactgagcatgccgtggcacgctgcccacttctttgaccaagcgagcg gtcacttcttgggaaaggaagctt |
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Protein
| Protein ID | habu1_s6078_g16673.t1 |
|---|---|
| Definition | - |
>habu1_s6078_g16673.t1 MGTIPSDSALGTEPIVVVHPEKEVCVFRAAPSLGNFRQGFLEEELIEEEEKEDGSEGKGPRSGLAANDLSGSREEEEPSI ASLVWHPKEGLGELGVDSGESLAPGRLSPVTKEASGTAGLAALGPEEEEEEESCPLGNAPQLPLGEEAEEMEGVCLLGSK ALGPGRSAQGALAQSCCIQAEDPVGDEQECPICTELYDQDYRKPALLNCSHVLCGQCLQAILQAGSAADIGRVRCPICRQ KTPMMEWEICKLQEELLLLSTAQVPASAPPAFSPLPPRQPGFWGGLEHHFHVRFHTSRVVGFFPCLRYPACLVGGLAELE RRYPWCYRTALLALAAAEMLSLLLVFLPILLLLLLFLILDK |
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