Gene
Gene Model ID | habu1_s6083_g16730 |
---|---|
Locus | habu1_scaffold6083 : 371123 ... 389965 : - |
To GenomeBrowser | habu1_scaffold6083:371123..389965 |
Genes list of scaffold | habu1_scaffold6083 |
Annotation by Blast2GO
Annotation | GO |
---|---|
e3 ubiquitin-protein ligase nhlrc1 | EC:6.3.2.19 GO:0000209 GO:0004842 GO:0005634 GO:0008270 GO:0016874 GO:0031398 GO:0043161 GO:0048471 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s6083_g16730.t1 | 1 | 1 | TPMT | 25 | 230 | 0.0 | 207.2 | 0.0 | 0.0 | 206.7 |
habu1_s6083_g16730.t1 | 1 | 1 | zf-RING_5 | 265 | 313 | 1.1e-07 | 31.4 | 2.1e-10 | 2.8e-07 | 30.1 |
habu1_s6083_g16730.t1 | 1 | 1 | zf-RING_2 | 265 | 312 | 9.5e-07 | 28.5 | 2.2e-09 | 3.0e-06 | 26.9 |
habu1_s6083_g16730.t1 | 1 | 1 | NHL | 421 | 448 | 3.1e-17 | 61.5 | 2.2e-09 | 2.9e-06 | 26.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s6083_g16730.t1 | gi|602642189|ref|XP_007427887.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Python bivittatus] | 0.0 |
habu1_s6083_g16730.t1 | gi|327270108|ref|XP_003219833.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Anolis carolinensis] | 0.0 |
habu1_s6083_g16730.t1 | gi|530626802|ref|XP_005302927.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Chrysemys picta bellii] | 0.0 |
habu1_s6083_g16730.t1 | gi|591360050|ref|XP_007054949.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Chelonia mydas] | 0.0 |
habu1_s6083_g16730.t1 | gi|558156563|ref|XP_006121878.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Pelodiscus sinensis] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 1.6 |
Venom grand-1 | 1.3 |
Pit, infrared sensing | 2.6 |
Nose | 1.5 |
Brain-1 | 1.6 |
Eye | 4.9 |
fetal fibroblast | 8.1 |
venom gland-2 | 1.6 |
Brain-2 | 1.9 |
Spleen | 2.5 |
Lung | 1.5 |
Liver | 4.4 |
Kidney | 10.6 |
Pancreas | 3.0 |
Small intestine | 1.1 |
Large intestine | 5.3 |
Stomach | 2.7 |
heart | 14.5 |
ovary | 17.5 |
cheek muscle | 5.6 |
Transcript
Transcript ID | habu1_s6083_g16730.t1 |
---|---|
Definition | - |
>habu1_s6083_g16730.t1 gcgcctccgcaggagccaggagttgagagcttcgcctgttgccgcctcgtccccgccgttactcttcgctcaggttgcct agaccatggaaaatccctccagctcctctagaaatgaagattgtgatgatccaaagttacaatgggatcgagtgatgact ggaaaagaatggctaaactgttgggatacaaacaatattggatttcataataaagaagagcatcgattcctgaagaaaca cctggatatttttctcaacggcaggaaggaattaagaatattttttccactttgtgggaaagctgttgaaatgaaatggt tagctgacatgggacatcatgtggttggtgtggaaattagtgaaattgcattgaaggactttttcacagaacaaaatctt tcattttcagaagaaatagttccagaaatccctggagctaaattactgaaatgcacatctctgaatatttctctgtattg ctgcagtttatatgacttgaccagctctgtgactggtcattttgatgggatttgggacagaggttctctagtagctgtta acccttctgagagagaacgctatgtccagttgatactatcactaatgaacagcatgtgtcgctgtcttctagttactttg ttgtatgatgtaaggaaacacaaaggtccaccgttctatgtttctgattcagacgtgaaaagtttatttggaaaagactg cgatattcaatgtcttgaaaaagtctatggtttggaagagcgacataagaacagcacaacaatcaatcctcttagactcg tactaatgactgccaaagctgctgatcaaacagaaatcatgacagagctgctagatcagtctgagaacaatctgctcgaa tgcaaagtgtgctttgaaaaatacagcctggagaaaaaacatcgaccgaagaacttaacatgtgggcatgtgatgtgcct ggagtgtgtcatgtctctggcccaccctcggaatttcaggctggagtgccctttctgtcgcagggcttgcaaatcttcag agaccagcgactgcttgccgttgttgcacctgatggaaatcctgagtccttcagccaatcaaactccagttgcaggaagg acggtggggagaagggaggctgtggctgcccctggatctcaagtcttcacgtttcatctttctttcggaggctggggaac gctgatcaaccccacggggctggccgtgtgtcagagctcgagctgtttagcggtggcccatgatggcaagaaaagaatta agctctttagcttcagtggcagctgcctacagcagtttggagaaaaagggcaatcgggaaatgacctcaggtacccaact gacgtcgcggtcactttggatggtcacattgtggtcgccgatagcggggaccgttcggtcaaagtgttcgattgtgatgg caggagcaagatggtcattgcagagtccttttccttgccgtggggcctggacacaacgccacaaaatgacatcctcatga ccgattcggaggcaggtgctctgtaccgcttgtcggctgactttaaaaagggagaattaaagggggtgaaaaagctgtac tctaacctgtgtcacccaaggaaagtggctgtttcgcccgtctccggagccatcgcagtcatcgaacatttgatggacaa agggccctgctacggcaataccaggctgaaaatcttcaacagagacttgcagctaatcagccaggtggacagttttggcc tgaatcttgtcttcccttccaaagtccatgccagtgctgtgacctttagcagggaagggcaagttatagtaactgatgct tataaccaagccgtcttctctcttggaaaacctgaagaattccctatgtgtaaacctttgataactcagggtctttccta ccctttagcattaactttcatatcagaccattctctagttgttttggatggtggcgatcattctttaaaaatatatactc tcagctaaacagtggtctgggtgggatctcagctcacaatttcaaggaagattattcaaaatgcttaattctccagctgg tgggtttgagtgttctctggtttagctgtagtggattttagttcaaacaggttgaaacaaatttaactctacagctttat atctccctccctgaatggaagtcatgttaacttatttctgagtagaagtgcactgccaaatgaccatccctagtagaatt actgtagtaaaatatatgaagccagatgtgacctactttgaaattgtatgtattcggttctgggtaggatgagtttctct tgggttatagatgatagaaagccatctatttgatctctttacaccagaaacttagggtttcttaaaacaaaataaaggat tcttttcttttctgcattattaaataattctgatttgtgttcgttt |
Protein
Protein ID | habu1_s6083_g16730.t1 |
---|---|
Definition | - |
>habu1_s6083_g16730.t1 MENPSSSSRNEDCDDPKLQWDRVMTGKEWLNCWDTNNIGFHNKEEHRFLKKHLDIFLNGRKELRIFFPLCGKAVEMKWLA DMGHHVVGVEISEIALKDFFTEQNLSFSEEIVPEIPGAKLLKCTSLNISLYCCSLYDLTSSVTGHFDGIWDRGSLVAVNP SERERYVQLILSLMNSMCRCLLVTLLYDVRKHKGPPFYVSDSDVKSLFGKDCDIQCLEKVYGLEERHKNSTTINPLRLVL MTAKAADQTEIMTELLDQSENNLLECKVCFEKYSLEKKHRPKNLTCGHVMCLECVMSLAHPRNFRLECPFCRRACKSSET SDCLPLLHLMEILSPSANQTPVAGRTVGRREAVAAPGSQVFTFHLSFGGWGTLINPTGLAVCQSSSCLAVAHDGKKRIKL FSFSGSCLQQFGEKGQSGNDLRYPTDVAVTLDGHIVVADSGDRSVKVFDCDGRSKMVIAESFSLPWGLDTTPQNDILMTD SEAGALYRLSADFKKGELKGVKKLYSNLCHPRKVAVSPVSGAIAVIEHLMDKGPCYGNTRLKIFNRDLQLISQVDSFGLN LVFPSKVHASAVTFSREGQVIVTDAYNQAVFSLGKPEEFPMCKPLITQGLSYPLALTFISDHSLVVLDGGDHSLKIYTLS |