Gene
| Gene Model ID | habu1_s6083_g16730 |
|---|---|
| Locus | habu1_scaffold6083 : 371123 ... 389965 : - |
| To GenomeBrowser | habu1_scaffold6083:371123..389965 |
| Genes list of scaffold | habu1_scaffold6083 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase nhlrc1 | EC:6.3.2.19 GO:0000209 GO:0004842 GO:0005634 GO:0008270 GO:0016874 GO:0031398 GO:0043161 GO:0048471 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s6083_g16730.t1 | 1 | 1 | TPMT | 25 | 230 | 0.0 | 207.2 | 0.0 | 0.0 | 206.7 |
| habu1_s6083_g16730.t1 | 1 | 1 | zf-RING_5 | 265 | 313 | 1.1e-07 | 31.4 | 2.1e-10 | 2.8e-07 | 30.1 |
| habu1_s6083_g16730.t1 | 1 | 1 | zf-RING_2 | 265 | 312 | 9.5e-07 | 28.5 | 2.2e-09 | 3.0e-06 | 26.9 |
| habu1_s6083_g16730.t1 | 1 | 1 | NHL | 421 | 448 | 3.1e-17 | 61.5 | 2.2e-09 | 2.9e-06 | 26.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s6083_g16730.t1 | gi|602642189|ref|XP_007427887.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Python bivittatus] | 0.0 |
| habu1_s6083_g16730.t1 | gi|327270108|ref|XP_003219833.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Anolis carolinensis] | 0.0 |
| habu1_s6083_g16730.t1 | gi|530626802|ref|XP_005302927.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Chrysemys picta bellii] | 0.0 |
| habu1_s6083_g16730.t1 | gi|591360050|ref|XP_007054949.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Chelonia mydas] | 0.0 |
| habu1_s6083_g16730.t1 | gi|558156563|ref|XP_006121878.1| | PREDICTED: E3 ubiquitin-protein ligase NHLRC1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.6 |
| Venom grand-1 | 1.3 |
| Pit, infrared sensing | 2.6 |
| Nose | 1.5 |
| Brain-1 | 1.6 |
| Eye | 4.9 |
| fetal fibroblast | 8.1 |
| venom gland-2 | 1.6 |
| Brain-2 | 1.9 |
| Spleen | 2.5 |
| Lung | 1.5 |
| Liver | 4.4 |
| Kidney | 10.6 |
| Pancreas | 3.0 |
| Small intestine | 1.1 |
| Large intestine | 5.3 |
| Stomach | 2.7 |
| heart | 14.5 |
| ovary | 17.5 |
| cheek muscle | 5.6 |
Transcript
| Transcript ID | habu1_s6083_g16730.t1 |
|---|---|
| Definition | - |
>habu1_s6083_g16730.t1 gcgcctccgcaggagccaggagttgagagcttcgcctgttgccgcctcgtccccgccgttactcttcgctcaggttgcct agaccatggaaaatccctccagctcctctagaaatgaagattgtgatgatccaaagttacaatgggatcgagtgatgact ggaaaagaatggctaaactgttgggatacaaacaatattggatttcataataaagaagagcatcgattcctgaagaaaca cctggatatttttctcaacggcaggaaggaattaagaatattttttccactttgtgggaaagctgttgaaatgaaatggt tagctgacatgggacatcatgtggttggtgtggaaattagtgaaattgcattgaaggactttttcacagaacaaaatctt tcattttcagaagaaatagttccagaaatccctggagctaaattactgaaatgcacatctctgaatatttctctgtattg ctgcagtttatatgacttgaccagctctgtgactggtcattttgatgggatttgggacagaggttctctagtagctgtta acccttctgagagagaacgctatgtccagttgatactatcactaatgaacagcatgtgtcgctgtcttctagttactttg ttgtatgatgtaaggaaacacaaaggtccaccgttctatgtttctgattcagacgtgaaaagtttatttggaaaagactg cgatattcaatgtcttgaaaaagtctatggtttggaagagcgacataagaacagcacaacaatcaatcctcttagactcg tactaatgactgccaaagctgctgatcaaacagaaatcatgacagagctgctagatcagtctgagaacaatctgctcgaa tgcaaagtgtgctttgaaaaatacagcctggagaaaaaacatcgaccgaagaacttaacatgtgggcatgtgatgtgcct ggagtgtgtcatgtctctggcccaccctcggaatttcaggctggagtgccctttctgtcgcagggcttgcaaatcttcag agaccagcgactgcttgccgttgttgcacctgatggaaatcctgagtccttcagccaatcaaactccagttgcaggaagg acggtggggagaagggaggctgtggctgcccctggatctcaagtcttcacgtttcatctttctttcggaggctggggaac gctgatcaaccccacggggctggccgtgtgtcagagctcgagctgtttagcggtggcccatgatggcaagaaaagaatta agctctttagcttcagtggcagctgcctacagcagtttggagaaaaagggcaatcgggaaatgacctcaggtacccaact gacgtcgcggtcactttggatggtcacattgtggtcgccgatagcggggaccgttcggtcaaagtgttcgattgtgatgg caggagcaagatggtcattgcagagtccttttccttgccgtggggcctggacacaacgccacaaaatgacatcctcatga ccgattcggaggcaggtgctctgtaccgcttgtcggctgactttaaaaagggagaattaaagggggtgaaaaagctgtac tctaacctgtgtcacccaaggaaagtggctgtttcgcccgtctccggagccatcgcagtcatcgaacatttgatggacaa agggccctgctacggcaataccaggctgaaaatcttcaacagagacttgcagctaatcagccaggtggacagttttggcc tgaatcttgtcttcccttccaaagtccatgccagtgctgtgacctttagcagggaagggcaagttatagtaactgatgct tataaccaagccgtcttctctcttggaaaacctgaagaattccctatgtgtaaacctttgataactcagggtctttccta ccctttagcattaactttcatatcagaccattctctagttgttttggatggtggcgatcattctttaaaaatatatactc tcagctaaacagtggtctgggtgggatctcagctcacaatttcaaggaagattattcaaaatgcttaattctccagctgg tgggtttgagtgttctctggtttagctgtagtggattttagttcaaacaggttgaaacaaatttaactctacagctttat atctccctccctgaatggaagtcatgttaacttatttctgagtagaagtgcactgccaaatgaccatccctagtagaatt actgtagtaaaatatatgaagccagatgtgacctactttgaaattgtatgtattcggttctgggtaggatgagtttctct tgggttatagatgatagaaagccatctatttgatctctttacaccagaaacttagggtttcttaaaacaaaataaaggat tcttttcttttctgcattattaaataattctgatttgtgttcgttt |
|
Protein
| Protein ID | habu1_s6083_g16730.t1 |
|---|---|
| Definition | - |
>habu1_s6083_g16730.t1 MENPSSSSRNEDCDDPKLQWDRVMTGKEWLNCWDTNNIGFHNKEEHRFLKKHLDIFLNGRKELRIFFPLCGKAVEMKWLA DMGHHVVGVEISEIALKDFFTEQNLSFSEEIVPEIPGAKLLKCTSLNISLYCCSLYDLTSSVTGHFDGIWDRGSLVAVNP SERERYVQLILSLMNSMCRCLLVTLLYDVRKHKGPPFYVSDSDVKSLFGKDCDIQCLEKVYGLEERHKNSTTINPLRLVL MTAKAADQTEIMTELLDQSENNLLECKVCFEKYSLEKKHRPKNLTCGHVMCLECVMSLAHPRNFRLECPFCRRACKSSET SDCLPLLHLMEILSPSANQTPVAGRTVGRREAVAAPGSQVFTFHLSFGGWGTLINPTGLAVCQSSSCLAVAHDGKKRIKL FSFSGSCLQQFGEKGQSGNDLRYPTDVAVTLDGHIVVADSGDRSVKVFDCDGRSKMVIAESFSLPWGLDTTPQNDILMTD SEAGALYRLSADFKKGELKGVKKLYSNLCHPRKVAVSPVSGAIAVIEHLMDKGPCYGNTRLKIFNRDLQLISQVDSFGLN LVFPSKVHASAVTFSREGQVIVTDAYNQAVFSLGKPEEFPMCKPLITQGLSYPLALTFISDHSLVVLDGGDHSLKIYTLS |
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