Gene
| Gene Model ID | habu1_s6083_g16731 |
|---|---|
| Locus | habu1_scaffold6083 : 390136 ... 413769 : + |
| To GenomeBrowser | habu1_scaffold6083:390136..413769 |
| Genes list of scaffold | habu1_scaffold6083 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lysine-specific histone demethylase 1b | EC:2.1.1.0 GO:0003677 GO:0005634 GO:0006349 GO:0008168 GO:0008270 GO:0016491 GO:0034648 GO:0034649 GO:0034720 GO:0043046 GO:0044030 GO:0050660 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s6083_g16731.t1 | 1 | 1 | zf-CW | 137 | 191 | 6.5e-12 | 44.9 | 3.2e-14 | 2.0e-11 | 43.4 |
| habu1_s6083_g16731.t1 | 1 | 1 | SWIRM | 286 | 359 | 1.8e-06 | 27.9 | 7.5e-09 | 4.6e-06 | 26.6 |
| habu1_s6083_g16731.t1 | 1 | 1 | Thi4 | 375 | 433 | 8.8e-10 | 38.0 | 3.3e-12 | 2.0e-09 | 36.8 |
| habu1_s6083_g16731.t1 | 1 | 1 | HI0933_like | 380 | 415 | 2.9e-07 | 29.3 | 1.0e-08 | 6.3e-06 | 24.9 |
| habu1_s6083_g16731.t1 | 1 | 1 | Pyr_redox_2 | 380 | 414 | 6.5e-07 | 29.4 | 5.4e-08 | 3.3e-05 | 23.8 |
| habu1_s6083_g16731.t1 | 1 | 1 | Pyr_redox | 380 | 420 | 1.0e-06 | 29.0 | 5.0e-07 | 0.00031 | 21.0 |
| habu1_s6083_g16731.t1 | 1 | 1 | FAD_binding_3 | 380 | 410 | 2.5e-06 | 26.8 | 3.2e-08 | 2.0e-05 | 23.8 |
| habu1_s6083_g16731.t1 | 1 | 1 | DAO | 381 | 415 | 5.6e-09 | 35.3 | 6.4e-08 | 4.0e-05 | 22.6 |
| habu1_s6083_g16731.t1 | 1 | 1 | Pyr_redox_3 | 382 | 418 | 6.1e-09 | 36.2 | 2.7e-08 | 1.7e-05 | 25.0 |
| habu1_s6083_g16731.t1 | 1 | 1 | NAD_binding_8 | 383 | 448 | 6.5e-13 | 48.5 | 2.4e-15 | 1.5e-12 | 47.3 |
| habu1_s6083_g16731.t1 | 1 | 1 | Amino_oxidase | 389 | 815 | 0.0 | 302.1 | 0.0 | 0.0 | 300.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s6083_g16731.t1 | gi|602642195|ref|XP_007427890.1| | PREDICTED: lysine-specific histone demethylase 1B [Python bivittatus] | 0.0 |
| habu1_s6083_g16731.t1 | gi|327270106|ref|XP_003219832.1| | PREDICTED: lysine-specific histone demethylase 1B [Anolis carolinensis] | 0.0 |
| habu1_s6083_g16731.t1 | gi|723534495|ref|XP_010299633.1| | PREDICTED: lysine-specific histone demethylase 1B isoform X1 [Balearica regulorum gibbericeps] | 0.0 |
| habu1_s6083_g16731.t1 | gi|704316897|ref|XP_010167774.1| | PREDICTED: lysine-specific histone demethylase 1B isoform X1 [Caprimulgus carolinensis] | 0.0 |
| habu1_s6083_g16731.t1 | gi|557289313|ref|XP_006027302.1| | PREDICTED: lysine-specific histone demethylase 1B isoform X1 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.8 |
| Venom grand-1 | 1.8 |
| Pit, infrared sensing | 3.3 |
| Nose | 2.9 |
| Brain-1 | 2.3 |
| Eye | 2.7 |
| fetal fibroblast | 5.2 |
| venom gland-2 | 4.0 |
| Brain-2 | 2.1 |
| Spleen | 5.2 |
| Lung | 2.9 |
| Liver | 3.5 |
| Kidney | 2.7 |
| Pancreas | 3.9 |
| Small intestine | 2.7 |
| Large intestine | 3.3 |
| Stomach | 2.7 |
| heart | 2.6 |
| ovary | 7.3 |
| cheek muscle | 2.7 |
Transcript
| Transcript ID | habu1_s6083_g16731.t1 |
|---|---|
| Definition | - |
>habu1_s6083_g16731.t1 ggggaagggctggccggggattgatttgacttacatcatctgaaagttgggttcttggatttctagcaccatgtcaggtg gaagagtccgaacgaagaaaaaggccacagctttagatcaagcacctgacaaccttccgttgagaagttcagggagacag gtgaggaaaaaggcagcagaggcagctgaggaggatgaagaaatatcagagaagaaatatcggaaatgtgaaaaagcagg gtgtactgcaacatgtccggtctgctttgctagtgctgctgaaagatgtgctaaaaatggctacacatcaaggtggtatc atctgtcctgcggagaacatttctgtaacgaatgttttgatcattactacagaagtcataaagatggttatgaaaaatac accgcgtggaaaaggatctggaccagtaatggaaaaagtgaacccagtcctaaagcttttatggctgatcaacagcttcc ttactgggttcagtgcacaaaggcggagtgtgggaagtggcgtcaattgacaaaggaaattcaacttacctcacaaatag ccaaagcatatcgctgtggcatgaaactgaacagttctactaaggtggaaggctcagaccagtgcaccatgcctgaggat ctgagagttgctgaagtttcagatcactggtggtattccatgcttatccttcctcccctattgaaggacagtgtggctgc tccattactgtctgcatactacccagactgtgtgggtatgagtccctcttgcaccagtactcaccgatcggttagtgaat ccagtgtgataaaaatggagaacttaaagactccaccttccatagccgggatgaacaaatacttccaacctttctatcag cccaacgaatgtggtaaagccttgtgtgtaaggccagatgtcatggaattagatgaactctatgagtttccagaatattc ccgggaccccaccatgtacctagcgctgcgaaatctcattctggccttgtggtacacaaactgcaaagaacctctaaccc ctcagaaatgtactcatcacataattgttcgaggactagtacgcattcgctgtgttcgggagacagaaagaatccttcat tttatgaccaggaaaggtctgattaatacaggagttttgtcagttaatcgagaccaagccttgcttcccaaagactacca caataaatctgtaatagtggttggagctggcccagcaggtttagcagctgcaagacaacttcaaaattttggaattaaag tccttgtgcttgaagcaaaggatagaattggcggacgagtatgggacgataagactttcaaggggatcattgtgggaaaa ggagctcagattgtgaatggctgtatcaacaatcctatagcactaatgtgtgagcaattgggcattaaaatgcacaaaat tggagagaagtgtgacttgatccaagaaggtggaaggataacagatcctgcaatagataagcgcatggattttcatttca attctatccttgatgttgtggcagattggagaaaagataaaagtcaacatcaagacattccacttggagataaaattcag gaaatctataaagtttttattcaggaatccggtatccagttcaatgaactagaggaaaaagtgctccagttccatgttag caatttagaatatgcctgtggcagtaacctccatgaagtttctgcacggtcttgggatcataatgaattttttgctcagt ttgccggtgatcacaccttattgaattcaggatactcagctataattgaaaaattagccgaaggcctggatattcggtta aatgttccagtctgtagtattgattactcaggagaagaggtaaaagtgaccacaacggatagaactctgtggacagcaaa aaaggttctagttgctgtacctttaactattcttcaaaaaccagcaattcagttcaaaccagctttatcagagagaaaaa tgaaagcgatcaacagtttaggagctggagtcattgagaagattgcactacagtttccttacagattctgggagagcaaa attcaaggagctgattactttggccatattccacctaattcaaacaaacgtggactcttcagtgttttctatgacgtgga cccacagcgtaaatgcagtgttctaatgtctgtaattactggagatgctgtgggaacaataaggaatttagatgacaagg aagtactgcaacagtgcatgaccgtgcttcgggaattgtttaaggaacaggaagtgccagatccggtcaaatatttcatt acaagatggagcaaagacccttggatccaaatggcatatagttttgtaaagacaaggggcagcggtgaagcatatgatat acttgctgaagacatacagggaaaactcttctttgctggagaggccacaaatcggcactttccgcagacagttacaggag cctacttgagcggggttcgagaagcaagcaaaatatcagcattttgaatactaaagtttacattttaaaacaaattttaa ctccacatggtgctcaaatttgtgaagacaaaagacggttttaagctacttcattgtttatgccttgaagatgcacttca gttttatcagaaaagcttgtaacagtatcattgcttctgagcattgctggcagctaagacaagcttattcatcccttatt ttttcacctgtattaggaaaggtagaactgtaatgaaccttaaatagtggtagatggactgtcaaatagctcataagttg aatgtttcttcaaaaggatagtaggtttctccaatcatgtctagggtggaaaaaaaaaccctcttaagaaatggttataa atataaacatggaggcctttggtaccattcagttatatattatgcataaacaatcataacatttattattga |
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Protein
| Protein ID | habu1_s6083_g16731.t1 |
|---|---|
| Definition | - |
>habu1_s6083_g16731.t1 MSGGRVRTKKKATALDQAPDNLPLRSSGRQVRKKAAEAAEEDEEISEKKYRKCEKAGCTATCPVCFASAAERCAKNGYTS RWYHLSCGEHFCNECFDHYYRSHKDGYEKYTAWKRIWTSNGKSEPSPKAFMADQQLPYWVQCTKAECGKWRQLTKEIQLT SQIAKAYRCGMKLNSSTKVEGSDQCTMPEDLRVAEVSDHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTSTHRS VSESSVIKMENLKTPPSIAGMNKYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKE PLTPQKCTHHIIVRGLVRIRCVRETERILHFMTRKGLINTGVLSVNRDQALLPKDYHNKSVIVVGAGPAGLAAARQLQNF GIKVLVLEAKDRIGGRVWDDKTFKGIIVGKGAQIVNGCINNPIALMCEQLGIKMHKIGEKCDLIQEGGRITDPAIDKRMD FHFNSILDVVADWRKDKSQHQDIPLGDKIQEIYKVFIQESGIQFNELEEKVLQFHVSNLEYACGSNLHEVSARSWDHNEF FAQFAGDHTLLNSGYSAIIEKLAEGLDIRLNVPVCSIDYSGEEVKVTTTDRTLWTAKKVLVAVPLTILQKPAIQFKPALS ERKMKAINSLGAGVIEKIALQFPYRFWESKIQGADYFGHIPPNSNKRGLFSVFYDVDPQRKCSVLMSVITGDAVGTIRNL DDKEVLQQCMTVLRELFKEQEVPDPVKYFITRWSKDPWIQMAYSFVKTRGSGEAYDILAEDIQGKLFFAGEATNRHFPQT VTGAYLSGVREASKISAF |
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