Gene
| Gene Model ID | habu1_s6115_g16780 |
|---|---|
| Locus | habu1_scaffold6115 : 316605 ... 360425 : - |
| To GenomeBrowser | habu1_scaffold6115:316605..360425 |
| Genes list of scaffold | habu1_scaffold6115 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s6115_g16780.t1 | 1 | 1 | RNase_Zc3h12a | 368 | 483 | 1.1e-07 | 31.7 | 6.2e-11 | 2.3e-07 | 30.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s6115_g16780.t1 | gi|637262186|ref|XP_008101590.1| | PREDICTED: mitochondrial ribonuclease P protein 3 [Anolis carolinensis] | 0.0 |
| habu1_s6115_g16780.t1 | gi|591381562|ref|XP_007065317.1| | PREDICTED: mitochondrial ribonuclease P protein 3 [Chelonia mydas] | 0.0 |
| habu1_s6115_g16780.t1 | gi|530583121|ref|XP_005285392.1| | PREDICTED: mitochondrial ribonuclease P protein 3 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s6115_g16780.t1 | gi|602662433|ref|XP_007436860.1| | PREDICTED: mitochondrial ribonuclease P protein 3-like, partial [Python bivittatus] | 0.0 |
| habu1_s6115_g16780.t1 | gi|558137296|ref|XP_006117746.1| | PREDICTED: mitochondrial ribonuclease P protein 3 isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.2 |
| Venom grand-1 | 6.4 |
| Pit, infrared sensing | 6.6 |
| Nose | 7.9 |
| Brain-1 | 3.9 |
| Eye | 4.5 |
| fetal fibroblast | 16.2 |
| venom gland-2 | 14.7 |
| Brain-2 | 4.6 |
| Spleen | 4.4 |
| Lung | 5.4 |
| Liver | 8.5 |
| Kidney | 4.4 |
| Pancreas | 3.7 |
| Small intestine | 5.2 |
| Large intestine | 5.2 |
| Stomach | 5.1 |
| heart | 7.6 |
| ovary | 46.4 |
| cheek muscle | 15.3 |
Transcript
| Transcript ID | habu1_s6115_g16780.t1 |
|---|---|
| Definition | - |
>habu1_s6115_g16780.t1 ccctgttttaatctgccagtgtaccactaatgaaggaacttcagaaatatgcttctgtcaaactggtagagtcgatagat cctaaagcatttcatccagaaattaaaattaaagatggcagtatgacgaagaaaaaagccggtaaagacagacttccccc gaaacctttcagtgcatttgctgctggatcatccaagataagggcaatgtacaatacaaataatgcagttgcaaatgagt cttttagtcctttgaacaaagtctctcctccagacacacctttgagtgccaaggaatgggagaagttaaaagaagaatat caacactataaaaaatttgaagatgttatgtttgatagcatgatacatgatcatagcccagtagatgtagctaaatcctt gctggttgcagtggctaaacgtgatggagatgttgaatatagtcatttggtgaagtacttgactatatgcgtttatcata aggacgtaggagagatttatgatatctataatattatgaaagccaaatataaatctttagaagcatcagcttattctttg ctcatcaaaggcttgagtgattccccacactggaaagagaccttggtgctactggaaaaggttaaaaaagtctcattcca ctcaagacaaaattatggagactgcattgagggtgccctgctcaaccaagaaagaaaccttgcatttgaattgtttcatg agatggtaactgaaaatctgactcctagtttgacaacaataaagcatttcttcgacttttgccagcctgtgaaggatgat catttgaaaaataaatgtattgatatcctctactacttaagagaacatcaaatttatcctgatgaatctctcgtgctgag cataaagcagtggtttgaaagtatttcaggagagaactggaaaggaaatttaacaagcatgaataatagcagtcagtgtc catcttgtggtcacgctttggaagatattaatctgactgaagaagaattcaccaatgtcaaggaaaaaataaaaagggat gtgattgaaggcactgatatatttcgaaatacatctccccaggaattagaacgttttcagagatttgtgaatgaacatcc cccttttgatgttgtgatcgatggcctcaatgttgccaagacaacccttctgaatccttcatctaaaactctgctggatg tggtcttctacctagcacagaagtatcatcgattgcttgtcctcgggcggagacacatgttgaacaattcatttcagtgg aaaaaaagagacatggatgacatgcagaagaaagcagacttcttctttactaataatacgtctaaagatgatccatttct gctctatgccagttttcactcaggtggtcactgtatgatagtaactagagatctattacgggatcacaaagctgttcttt ctaatagtgttactcgtcgcttattttttaaatggcaacgtggacatcagatggtggtatcaagctacgtaccagggaag attttaacatttgaggatgctttgccatacgatacaattgtgcagactgatggtaacacatggcacattccctatgatga caacttgtccaagagagcttcttatgaaattccagtgaagtggctctgtcttcgaaagaaataaaagatgcccttttttt gttcagagtgaaaatgtatgcatgtcacccttatttgaaataaattccaaataaactagttaaaatatattcatttt |
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Protein
| Protein ID | habu1_s6115_g16780.t1 |
|---|---|
| Definition | - |
>habu1_s6115_g16780.t1 MKELQKYASVKLVESIDPKAFHPEIKIKDGSMTKKKAGKDRLPPKPFSAFAAGSSKIRAMYNTNNAVANESFSPLNKVSP PDTPLSAKEWEKLKEEYQHYKKFEDVMFDSMIHDHSPVDVAKSLLVAVAKRDGDVEYSHLVKYLTICVYHKDVGEIYDIY NIMKAKYKSLEASAYSLLIKGLSDSPHWKETLVLLEKVKKVSFHSRQNYGDCIEGALLNQERNLAFELFHEMVTENLTPS LTTIKHFFDFCQPVKDDHLKNKCIDILYYLREHQIYPDESLVLSIKQWFESISGENWKGNLTSMNNSSQCPSCGHALEDI NLTEEEFTNVKEKIKRDVIEGTDIFRNTSPQELERFQRFVNEHPPFDVVIDGLNVAKTTLLNPSSKTLLDVVFYLAQKYH RLLVLGRRHMLNNSFQWKKRDMDDMQKKADFFFTNNTSKDDPFLLYASFHSGGHCMIVTRDLLRDHKAVLSNSVTRRLFF KWQRGHQMVVSSYVPGKILTFEDALPYDTIVQTDGNTWHIPYDDNLSKRASYEIPVKWLCLRKK |
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