Gene
| Gene Model ID | habu1_s6274_g17028 |
|---|---|
| Locus | habu1_scaffold6274 : 290184 ... 297435 : - |
| To GenomeBrowser | habu1_scaffold6274:290184..297435 |
| Genes list of scaffold | habu1_scaffold6274 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ubiquitin-40s ribosomal protein s27a | GO:0002755 GO:0003735 GO:0005654 GO:0006412 GO:0007250 GO:0016020 GO:0019985 GO:0022627 GO:0034134 GO:0034138 GO:0034142 GO:0034146 GO:0034154 GO:0035419 GO:0035681 GO:0035682 GO:0042254 GO:0044822 GO:0046872 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s6274_g17028.t1 | 1 | 1 | Rad60-SLD | 1 | 71 | 1.5e-20 | 72.6 | 2.2e-23 | 3.0e-20 | 71.6 |
| habu1_s6274_g17028.t1 | 1 | 1 | ubiquitin | 6 | 74 | 2.6e-35 | 119.6 | 2.6e-38 | 3.5e-35 | 119.2 |
| habu1_s6274_g17028.t1 | 1 | 1 | Ubiquitin_2 | 11 | 69 | 2.3e-06 | 27.7 | 8.0e-09 | 1.1e-05 | 25.6 |
| habu1_s6274_g17028.t1 | 1 | 1 | Ribosomal_S27 | 101 | 147 | 1.5e-28 | 98.3 | 2.0e-31 | 2.7e-28 | 97.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s6274_g17028.t1 | gi|47604951|ref|NP_990284.1| | ubiquitin-40S ribosomal protein S27a [Gallus gallus] | 0.0 |
| habu1_s6274_g17028.t1 | gi|4506713|ref|NP_002945.1| | ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens] | 0.0 |
| habu1_s6274_g17028.t1 | gi|543744809|ref|XP_005513215.1| | PREDICTED: ubiquitin-40S ribosomal protein S27a [Columba livia] | 0.0 |
| habu1_s6274_g17028.t1 | gi|327262731|ref|XP_003216177.1| | PREDICTED: ubiquitin-40S ribosomal protein S27a [Anolis carolinensis] | 0.0 |
| habu1_s6274_g17028.t1 | gi|545817523|ref|XP_003125184.2| | PREDICTED: ubiquitin-40S ribosomal protein S27a [Sus scrofa] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1139.3 |
| Venom grand-1 | 4164.2 |
| Pit, infrared sensing | 1738.0 |
| Nose | 1057.1 |
| Brain-1 | 264.1 |
| Eye | 1051.8 |
| fetal fibroblast | 1276.9 |
| venom gland-2 | 3375.6 |
| Brain-2 | 201.8 |
| Spleen | 1676.7 |
| Lung | 1264.0 |
| Liver | 2889.1 |
| Kidney | 2193.0 |
| Pancreas | 2675.4 |
| Small intestine | 2751.1 |
| Large intestine | 1383.8 |
| Stomach | 2299.1 |
| heart | 1010.3 |
| ovary | 207.1 |
| cheek muscle | 1301.4 |
Transcript
| Transcript ID | habu1_s6274_g17028.t1 |
|---|---|
| Definition | - |
>habu1_s6274_g17028.t1 tctgccttgtttcaaggctgggaaaccccgtgctcagccgagcagcctctctttccggcgtcggccattgtgagagcggg tggtgggtagaaccatcactaggcgctctaccgccgccatgcagatcttcgtgaagaccctaacggggaaaaccattacc ctcgaggttgaaccatctgatactatagaaaatgtcaaagccaagatccaggataaagaagggattcctcctgaccaaca gcgtttaatttttgctggcaaacaattggaggatggacgtactctgtctgattacaacatccaaaaggaatcgacccttc atcttgtgctgagacttcgtggtggggcaaagaaaagaaagaagaagtcttacaccactcctaagaagaataaacataag agaaagaaggtgaaactcgctgtccttaaatactacaaggtggatgagaatggcaaaatcagccgcttacgccgtgagtg tccatctgaagaatgtggggccggagtgttcatggctagccactttgatagacattattgtggcaagtgctgtttgacat actgcttcaataaaccagaagacaagtgaatatgtctattgtaataaaaaacctttaaacattactgttt |
|
Protein
| Protein ID | habu1_s6274_g17028.t1 |
|---|---|
| Definition | - |
>habu1_s6274_g17028.t1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR KKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK |
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