Gene
| Gene Model ID | habu1_s7284_g17890 |
|---|---|
| Locus | habu1_scaffold7284 : 255062 ... 266495 : - |
| To GenomeBrowser | habu1_scaffold7284:255062..266495 |
| Genes list of scaffold | habu1_scaffold7284 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| l-lactate dehydrogenase a chain | EC:1.1.1.27 GO:0004459 GO:0005634 GO:0005739 GO:0005829 GO:0006094 GO:0006096 GO:0006534 GO:0016020 GO:0021762 GO:0031668 GO:0035686 GO:0044262 GO:0055114 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7284_g17890.t1 | 1 | 1 | Ldh_1_N | 21 | 160 | 0.0 | 171.1 | 0.0 | 0.0 | 170.6 |
| habu1_s7284_g17890.t1 | 1 | 1 | Ldh_1_C | 164 | 324 | 1.1e-30 | 106.5 | 1.9e-33 | 9.6e-30 | 103.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7284_g17890.t1 | gi|602658652|ref|XP_007435027.1| | PREDICTED: L-lactate dehydrogenase A chain [Python bivittatus] | 0.0 |
| habu1_s7284_g17890.t1 | gi|327259941|ref|XP_003214794.1| | PREDICTED: L-lactate dehydrogenase A chain [Anolis carolinensis] | 0.0 |
| habu1_s7284_g17890.t1 | gi|700386908|ref|XP_009933577.1| | PREDICTED: L-lactate dehydrogenase A chain isoform X1 [Opisthocomus hoazin] | 0.0 |
| habu1_s7284_g17890.t1 | gi|700431836|ref|XP_009954724.1| | PREDICTED: L-lactate dehydrogenase A chain isoform X1 [Leptosomus discolor] | 0.0 |
| habu1_s7284_g17890.t1 | gi|701370361|ref|XP_009962974.1| | PREDICTED: L-lactate dehydrogenase A chain isoform X1 [Tyto alba] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 41.1 |
| Venom grand-1 | 411.9 |
| Pit, infrared sensing | 95.8 |
| Nose | 33.6 |
| Brain-1 | 29.4 |
| Eye | 111.9 |
| fetal fibroblast | 194.9 |
| venom gland-2 | 86.8 |
| Brain-2 | 32.7 |
| Spleen | 18.7 |
| Lung | 165.6 |
| Liver | 1113.5 |
| Kidney | 1665.2 |
| Pancreas | 13.9 |
| Small intestine | 50.5 |
| Large intestine | 103.1 |
| Stomach | 118.7 |
| heart | 75.7 |
| ovary | 92.5 |
| cheek muscle | 11498.2 |
Transcript
| Transcript ID | habu1_s7284_g17890.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17890.t1 cggtataatcaatttatatggccccgcatggatgctgagcaggagaagccggtcttatggctacaggggttaaaaaccac atgccctgtagaataaccttcctacataaggcaacagggttttttttcccagctcctgacacttacagaaatatcctatt ttattactggcttgcttgtccttcctgcaggaagctcagtggagcctaggcatagtctccgctttttccaatattactgt tgcaattgccccatcagatgcaccaagacacagactatcccaggggcccttacagaaaagtagagcttccaaagagtgat caaaactgtataaatacaaagattgttacaagatgtctctcaaagaaaaactgattgaaactatccataaagaagaaaaa gaacatgcccagaacaaaatcaccgtggttggggttggtgcagttggcatggcttgtgccataagtattttgatgaagga attggctgatgaactcgctcttgttgatgttgtggaagacaagctgaagggagagatgctggatcttcagcatggcagcc tctttctccgaacaccaaagattgtctctggcaaagattatgctgtgactgcacactctaaattggtcatcatcactgct ggagctcgtcaacaagaaggcgaatctcgtcttaacctggttcagcgcaatgtgaatatcttcaaattcatcattcccaa cattgtcaaatacagccctaactgcaagctgcttgttgtttccaatccagtggatattctgacctatgtggcatggaaaa tcagtggctttcctaagcaccgtgttattggaagtggctgtaatctggactctgcccgtttccgccatctgatgggtgac aggctgggtatccatcctcttagctgccatagttggattgttggagagcatggagattccagtgtgcctgtctggagtgg tgttaatgttgctggtgtctccctaaaagagttgcatcctgagatgggtactgatggagacaaggagaactggaaagaag tccacaagcaggtggtggacagtgcttatgaggtgatcaggctgaagggatacacatcatgggcaattggtctctctgtg gctgatctggctgaaactatcatgaagaatttaaggagagtacatccaatttctacaatggtgaagggtatgcatggaat caaagatgacgtcttcctaagcgttccatgcattctgggctcttcaggcattacagatgtgatcaaaatgactttgaaga ctgaagaagaagataaactgaagaagagtgctgatacactgtgggggatccagaaggagcttcagttttaagtctgtctc tttgctgtttactaatgtgaaacaggtcttagttgatggttatttgcacttttcaaacgagacaattcctttacagtatg tatctaaagcctcagtggttaaattacaacaaaattcctgttcctcatttagaaacagaagctgcaagattcctatcttg atctgtgaccagaataggaatataatgtggttttatgaagggacat |
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Protein
| Protein ID | habu1_s7284_g17890.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17890.t1 MSLKEKLIETIHKEEKEHAQNKITVVGVGAVGMACAISILMKELADELALVDVVEDKLKGEMLDLQHGSLFLRTPKIVSG KDYAVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKHRVIG SGCNLDSARFRHLMGDRLGIHPLSCHSWIVGEHGDSSVPVWSGVNVAGVSLKELHPEMGTDGDKENWKEVHKQVVDSAYE VIRLKGYTSWAIGLSVADLAETIMKNLRRVHPISTMVKGMHGIKDDVFLSVPCILGSSGITDVIKMTLKTEEEDKLKKSA DTLWGIQKELQF |
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