Gene
| Gene Model ID | habu1_s7284_g17895 |
|---|---|
| Locus | habu1_scaffold7284 : 409684 ... 484505 : + |
| To GenomeBrowser | habu1_scaffold7284:409684..484505 |
| Genes list of scaffold | habu1_scaffold7284 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| secretion-regulating guanine nucleotide exchange factor | GO:0005730 GO:0005737 GO:0045111 GO:0050709 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7284_g17895.t2 | 6 | 1 | RCC1 | 12 | 60 | 0.0 | 185.9 | 9.0e-13 | 4.4e-09 | 36.3 |
| habu1_s7284_g17895.t2 | 3 | 1 | RCC1_2 | 47 | 76 | 1.7e-32 | 110.3 | 3.0e-09 | 1.5e-05 | 24.4 |
| habu1_s7284_g17895.t2 | 6 | 2 | RCC1 | 64 | 112 | 0.0 | 185.9 | 3.4e-13 | 1.7e-09 | 37.7 |
| habu1_s7284_g17895.t2 | 3 | 2 | RCC1_2 | 99 | 128 | 1.7e-32 | 110.3 | 6.1e-11 | 3.0e-07 | 29.8 |
| habu1_s7284_g17895.t2 | 6 | 3 | RCC1 | 115 | 164 | 0.0 | 185.9 | 7.7e-14 | 3.8e-10 | 39.8 |
| habu1_s7284_g17895.t2 | 6 | 4 | RCC1 | 192 | 222 | 0.0 | 185.9 | 3.2e-06 | 0.016 | 15.4 |
| habu1_s7284_g17895.t2 | 3 | 3 | RCC1_2 | 210 | 237 | 1.7e-32 | 110.3 | 7.9e-12 | 3.9e-08 | 32.6 |
| habu1_s7284_g17895.t2 | 6 | 5 | RCC1 | 226 | 274 | 0.0 | 185.9 | 4.0e-07 | 0.002 | 18.3 |
| habu1_s7284_g17895.t2 | 6 | 6 | RCC1 | 281 | 344 | 0.0 | 185.9 | 7.6e-15 | 3.8e-11 | 43.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7284_g17895.t2 | gi|637246404|ref|XP_008105742.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X4 [Anolis carolinensis] | 0.0 |
| habu1_s7284_g17895.t2 | gi|637246402|ref|XP_008105740.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X3 [Anolis carolinensis] | 0.0 |
| habu1_s7284_g17895.t2 | gi|637246400|ref|XP_008105732.1| | PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.7 |
| Venom grand-1 | 0.7 |
| Pit, infrared sensing | 1.2 |
| Nose | 0.6 |
| Brain-1 | 1.8 |
| Eye | 1.2 |
| fetal fibroblast | 1.8 |
| venom gland-2 | 0.2 |
| Brain-2 | 1.1 |
| Spleen | 0.9 |
| Lung | 0.9 |
| Liver | 3.0 |
| Kidney | 3.8 |
| Pancreas | 1.0 |
| Small intestine | 1.0 |
| Large intestine | 0.5 |
| Stomach | 0.7 |
| heart | 2.2 |
| ovary | 0.5 |
| cheek muscle | 1.6 |
Transcript
| Transcript ID | habu1_s7284_g17895.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17895.t1 aggcggactttattggcctccgccagcgcttccgcaagtgggttccgccttcttcggcgactactatggccgtcgcccgc caggaggccacacgagcgctgctcgcttggggagcaaacagttatggacaacttggccttggtcataaaaatgatctgct gctgccaaaagctgtgaagtcatttatctttaatcagaattgtatcaaaagcattactggtggtggaggtcattctgcta tccttaccgatactggagagatctttttctgtggccagaataaagatggacagttgggacttggtcatactgaggatgtg acgcattttaccttatgttcttctctttgtggctgtcctatcgtgcaagttgcctgtggctgggattttacaattgtact tgctggaaatggccaagtattctcctgtggatctaattcctttggacaattgggaattcctgatatttcaggcagatgca ctgttcctgcaatgattaagtctttacaggataaagtaataaatattgctgctggactcaggcatgctgttgctgtgatt gaaaatggttctgtatttcaatggggaattggtatggcatctcaagcaaagcgaatgtgccaagaaaaaaatattccttc tttcttgagggcaaaggaaccttgcaaagtaccaggttttgaaaatgtcaaagtgaggagtgtagcttctggctcacatc atgttgtgtcactcacagatgatggagatttatatgtttggggaaacaataagcacaagcaactattaagtgaagactct gttgttttggaacctcagaagattgaagcttactattttaatggtgaaaaaattagaagaatttggagtggttggacaca cttggtagtacaatcagagacagaggaagtcttcacctggggtagaggagactatggtcaacttggaagaagtgagatgc cgtgcaaaagagagagccaggacagaaagagatcaacagagcatcatttgaaagagtcctcttttgctcctgctacagtg cccaaactctctggtgcatctgagattgcatgtggttcggagcacaatctagcaatagttggtaatcagtgtttttcctg gggatggaacgagcacggcatgtgtggcaatgaaacagaagaaaatgtttgtcttcctcagcctgtgagagctctttgtt ctgcagagctgctttcaattggatgtggagctggacactccttagcattttgcggtttaccaagcttagacgtaacactg tagaaccctctgcacaattttaaattcattctaaggcaggggtctccaaccttggcaactttaagacttgtggacttcaa ctcccagaattcctcagccagcaaagctggcaaagcaaagctggctgaggaattctgggagttgaagtccacaagtctta aagttgccaaggttgaggacccctgttctaaggtttatgcttggttgataaatgcagttaatgtcaaaagcaat |
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| Transcript ID | habu1_s7284_g17895.t2 |
| Definition | - |
>habu1_s7284_g17895.t2 aggcggactttattggcctccgccagcgcttccgcaagtgggttccgccttcttcggcgactactatggccgtcgcccgc caggaggccacacgagcgctgctcgcttggggagcaaacagttatggacaacttggccttggtcataaaaatgatctgct gctgccaaaagctgtgaagtcatttatctttaatcagaattgtatcaaaagcattactggtggtggaggtcattctgcta tccttaccgatactggagagatctttttctgtggccagaataaagatggacagttgggacttggtcatactgaggatgtg acgcattttaccttatgttcttctctttgtggctgtcctatcgtgcaagttgcctgtggctgggattttacaattgtact tgctggaaatggccaagtattctcctgtggatctaattcctttggacaattgggaattcctgatatttcaggcagatgca ctgttcctgcaatgattaagtctttacaggataaagtaataaatattgctgctggactcaggcatgctgttgctgtgatt gaaaatggttctgtatttcaatggggaattggtatggcatctcaagcaaagcgaatgtgccaagaaaaaaatattccttc tttcttgagggcaaaggaaccttgcaaagtaccaggttttgaaaatgtcaaagtgaggagtgtagcttctggctcacatc atgttgtgtcactcacagatgatggagatttatatgtttggggaaacaataagcacaagcaactattaagtgaagactct gttgttttggaacctcagaagattgaagcttactattttaatggtgaaaaaattagaagaatttggagtggttggacaca cttggtagtacaatcagagacagaggaagtcttcacctggggtagaggagactatggtcaacttggaagaagtgagatgc cgtgcaaaagagagagccaggacagaaagagatcaacagagcatcatttgaaagagtcctcttttgctcctgctacagtg cccaaactctctggtgcatctgagattgcatgtggttcggagcacaatctagcaatagttgcacaacattgattaccatg aaaaggaagagcttgtaggtaatcagtgtttttcctggggatggaacgagcacggcatgtgtggcaatgaaacagaagaa aatgtttgtcttcctcagcctgtgagagctctttgttctgcagagctgctttcaattggatgtggagctggacactcctt agcattttgcggtttaccaagcttagacgtaacactgtagaaccctctgcacaattttaaattcattctaaggcaggggt ctccaaccttggcaactttaagacttgtggacttcaactcccagaattcctcagccagcaaagctggcaaagcaaagctg gctgaggaattctgggagttgaagtccacaagtcttaaagttgccaaggttgaggacccctgttctaaggtttatgcttg gttgataaatgcagttaatgtcaaaagcaat |
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Protein
| Protein ID | habu1_s7284_g17895.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17895.t1 MAVARQEATRALLAWGANSYGQLGLGHKNDLLLPKAVKSFIFNQNCIKSITGGGGHSAILTDTGEIFFCGQNKDGQLGLG HTEDVTHFTLCSSLCGCPIVQVACGWDFTIVLAGNGQVFSCGSNSFGQLGIPDISGRCTVPAMIKSLQDKVINIAAGLRH AVAVIENGSVFQWGIGMASQAKRMCQEKNIPSFLRAKEPCKVPGFENVKVRSVASGSHHVVSLTDDGDLYVWGNNKHKQL LSEDSVVLEPQKIEAYYFNGEKIRRIWSGWTHLVVQSETEEVFTWGRGDYGQLGRSEMPCKRESQDRKRSTEHHLKESSF APATVPKLSGASEIACGSEHNLAIVGNQCFSWGWNEHGMCGNETEENVCLPQPVRALCSAELLSIGCGAGHSLAFCGLPS LDVTL |
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| Protein ID | habu1_s7284_g17895.t2 |
| Definition | - |
>habu1_s7284_g17895.t2 MAVARQEATRALLAWGANSYGQLGLGHKNDLLLPKAVKSFIFNQNCIKSITGGGGHSAILTDTGEIFFCGQNKDGQLGLG HTEDVTHFTLCSSLCGCPIVQVACGWDFTIVLAGNGQVFSCGSNSFGQLGIPDISGRCTVPAMIKSLQDKVINIAAGLRH AVAVIENGSVFQWGIGMASQAKRMCQEKNIPSFLRAKEPCKVPGFENVKVRSVASGSHHVVSLTDDGDLYVWGNNKHKQL LSEDSVVLEPQKIEAYYFNGEKIRRIWSGWTHLVVQSETEEVFTWGRGDYGQLGRSEMPCKRESQDRKRSTEHHLKESSF APATVPKLSGASEIACGSEHNLAIVAQH |
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