Gene
| Gene Model ID | habu1_s7284_g17897 |
|---|---|
| Locus | habu1_scaffold7284 : 661432 ... 668893 : - |
| To GenomeBrowser | habu1_scaffold7284:661432..668893 |
| Genes list of scaffold | habu1_scaffold7284 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| myoblast determination protein 1 homolog | GO:0000785 GO:0000978 GO:0001047 GO:0001228 GO:0003705 GO:0005634 GO:0005667 GO:0005737 GO:0009605 GO:0019899 GO:0031490 GO:0035914 GO:0042693 GO:0043403 GO:0043484 GO:0043966 GO:0043967 GO:0045663 GO:0045944 GO:0046982 GO:0048743 GO:0070888 GO:0071392 GO:1901741 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7284_g17897.t1 | 1 | 1 | Basic | 7 | 97 | 7.6e-31 | 106.7 | 5.3e-34 | 2.0e-30 | 105.3 |
| habu1_s7284_g17897.t1 | 1 | 1 | HLH | 98 | 149 | 2.6e-15 | 55.8 | 1.0e-18 | 3.8e-15 | 55.3 |
| habu1_s7284_g17897.t1 | 1 | 1 | Myf5 | 164 | 232 | 3.8e-26 | 91.4 | 1.0e-29 | 3.8e-26 | 91.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7284_g17897.t1 | gi|602673495|ref|XP_007442245.1| | PREDICTED: myoblast determination protein 1 homolog [Python bivittatus] | 0.0 |
| habu1_s7284_g17897.t1 | gi|327259933|ref|XP_003214790.1| | PREDICTED: myoblast determination protein 1 [Anolis carolinensis] | 0.0 |
| habu1_s7284_g17897.t1 | gi|45383692|ref|NP_989545.1| | 0.0 | |
| habu1_s7284_g17897.t1 | gi|3915780|sp|P16075.2|MYOD1_CHICK | Myoblast determination protein 1 homolog | 0.0 |
| habu1_s7284_g17897.t1 | gi|530644127|ref|XP_005308741.1| | PREDICTED: myoblast determination protein 1 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.2 |
| Venom grand-1 | 2.7 |
| Pit, infrared sensing | 0.6 |
| Nose | 0.0 |
| Brain-1 | 0.0 |
| Eye | 0.4 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.3 |
| Brain-2 | 0.0 |
| Spleen | 0.0 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.3 |
| cheek muscle | 40.7 |
Transcript
| Transcript ID | habu1_s7284_g17897.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17897.t1 gtccgggtggggagcccggcggccaccgctcttccatggacgtcctaggccacatggagctgaccgagggctccctctgc tccttctcgcccgccggcgacttctacgacgacccttgcttcaacacgtcggacatgcacttcttcgaagacttggaccc gcggctggtgcacgtgggaggcctgctgaaggccgacgagcacagccaccaccatcaccacggccacgaggacgagcaca tccgggcgcccagcgggcaccaccaggccggccgctgcctgctttgggcctgcaaggcctgcaagaggaagaccaccaac gccgaccgccggaaggcggccaccatgcgcgagcggaggcggctcagcaaggtcaacgaggccttcgagacgctcaagcg ctgcacctccaccaaccccaaccagcgcctgcccaaggtggagatcctgcgcaacgccatccgatacatcgaaagcctgc aggcgctgctgcgggaacaagaggatgtctactacccggtcctggaacactacagcggcgactccgacgcctccagcccc cgctccaattgctccgacggcatgatggaatacagtggtcctccttgcagttctcgcagaaggagcagttatgacagcaa ctactattcagaatcacttagtgattcaaagcaagggaagaattcagtcgtttccagcctagattgcttgtccagcatcg tggaacggatttcaacagagagcacagcctgtcctgctctacccacagctgaaagtgggattgaagggagcccttgttca ctccacgaaggggccagcctgagtgataccggagcccaaaccagctccccagccagctgtactcagaagttgccaatgct tcttccagatcctctgctggatctggatttctcttataagcagcctggcttggactgggatgctataaatgaccgaatag cccttattcgtcttatcttccctcgtctacaattcctgggcaaccagcagctggagtcaaatgttatttctggcagggac aaggaaaataacttccaggcagctgctctttttctggccagtaaactggcttcttgaaaccagccctgagtaacttgttc ttccttcgaaatacagaatgctgtgctaatagccaca |
|
Protein
| Protein ID | habu1_s7284_g17897.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17897.t1 MDVLGHMELTEGSLCSFSPAGDFYDDPCFNTSDMHFFEDLDPRLVHVGGLLKADEHSHHHHHGHEDEHIRAPSGHHQAGR CLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSTNPNQRLPKVEILRNAIRYIESLQALLREQEDVYY PVLEHYSGDSDASSPRSNCSDGMMEYSGPPCSSRRRSSYDSNYYSESLSDSKQGKNSVVSSLDCLSSIVERISTESTACP ALPTAESGIEGSPCSLHEGASLSDTGAQTSSPASCTQKLPMLLPDPLLDLDFSYKQPGLDWDAINDRIALIRLIFPRLQF LGNQQLESNVISGRDKENNFQAAALFLASKLAS |
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