Gene
| Gene Model ID | habu1_s7284_g17904 |
|---|---|
| Locus | habu1_scaffold7284 : 1061066 ... 1107023 : - |
| To GenomeBrowser | habu1_scaffold7284:1061066..1107023 |
| Genes list of scaffold | habu1_scaffold7284 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nucleobindin-2 isoform x1 | GO:0005634 GO:0005737 GO:0012505 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7284_g17904.t1 | 1 | 1 | EF-hand_7 | 258 | 331 | 3.8e-12 | 46.1 | 1.3e-15 | 3.8e-12 | 46.1 |
| habu1_s7284_g17904.t1 | 2 | 1 | EF-hand_1 | 258 | 281 | 8.4e-09 | 34.1 | 7.5e-07 | 0.0022 | 17.1 |
| habu1_s7284_g17904.t1 | 1 | 1 | EF-hand_6 | 258 | 281 | 2.5e-06 | 26.9 | 1.2e-07 | 0.00036 | 20.1 |
| habu1_s7284_g17904.t1 | 2 | 2 | EF-hand_1 | 311 | 332 | 8.4e-09 | 34.1 | 4.5e-06 | 0.013 | 14.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7284_g17904.t1 | gi|602650261|ref|XP_007431527.1| | PREDICTED: nucleobindin-2 [Python bivittatus] | 0.0 |
| habu1_s7284_g17904.t1 | gi|327259929|ref|XP_003214788.1| | PREDICTED: nucleobindin-2 [Anolis carolinensis] | 0.0 |
| habu1_s7284_g17904.t1 | gi|558215589|ref|XP_006134656.1| | PREDICTED: nucleobindin-2 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s7284_g17904.t1 | gi|564235997|ref|XP_006274910.1| | PREDICTED: nucleobindin-2 [Alligator mississippiensis] | 0.0 |
| habu1_s7284_g17904.t1 | gi|697463967|ref|XP_009667442.1| | PREDICTED: nucleobindin-2 [Struthio camelus australis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 17.5 |
| Venom grand-1 | 92.9 |
| Pit, infrared sensing | 18.4 |
| Nose | 27.9 |
| Brain-1 | 8.8 |
| Eye | 32.9 |
| fetal fibroblast | 41.8 |
| venom gland-2 | 556.4 |
| Brain-2 | 8.8 |
| Spleen | 41.1 |
| Lung | 13.8 |
| Liver | 19.4 |
| Kidney | 10.4 |
| Pancreas | 123.9 |
| Small intestine | 13.2 |
| Large intestine | 9.6 |
| Stomach | 20.7 |
| heart | 13.2 |
| ovary | 11.9 |
| cheek muscle | 9.8 |
Transcript
| Transcript ID | habu1_s7284_g17904.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17904.t1 ggcttgcctggcggcggcggcggcagcatcggctgcttcgagacgctgactctagtataagccgaggggggcatttttca gccccaaaaatgggctgaaaacctcagcttatactcgagtatatacggtatattatttcttcaaaaaggtggtagcacgg agtgtgatttacttaacaaatgtgagttatggatccttgccggaggaagcagataagatggagaactactttattacaac agtgtgttttgctgctgacctatgttgtaattatactggaagcagtgcctatagatgtagacaagacaaaagtaaaggag gaagaaaaagacagcgcaacagtagaaaatccggacactggattgtattatgatgtctatctcaggcaagtgatagaggt tttggaaacagacaaacatttcagagagaaactccaaacagcagacatagaagaaataaagagtggaaagttaagcaaag agctagacttagttggccataaggtgagaacaaaactggatgaactgaaaaggcaggaagttgcaagattaaggatgtta atcaaagccaagattgatgcatatcaagattctggcgtagaccatcaagctcttctcaaacagtttgggcatctgaacca tcacaaccctcacacttttgaagttaaagatttagacatgctaatcaaaactgctacacatgacttagaaaactatgaca ctgagcgtcatgaggagtttaaaaagtatgagatgatgaaagaacatgaaaggagagaatatttaaaaacactggatgaa gaaaagaggcaccaagaagaagcaaaatatgaggacatgaaaaaaaagcacaataatcaccccaaagttaaccatcctgg aagtaaagaccaactgaaagaggtatgggaggaagcagatggcctagatcctaatgattttgatccaaagacttttttca agttgcatgatgtcaatgctgatggttttctggatgaacaggaattagaagctctatttactagggagctagagaaagtc tatgaccccaaaaatgaagaggatgatatggtagaaatggaagaagagaggctgcgaatgagagagcatgtcatgaatga ggttgacattaacaaagaccggttagtcaccttggaagagttcatgagagctacagagaaaagagagtttttggaaccag aaagctgggagactctggaccagcagcaggtcttcaatgaagaagatctgaaggaatttgaaagtcacattttccagaaa gaagatgaattgcaaaagcaggcattagaacttcagaaaaagagggaagagctacaacagcaacaagacttccttcaggc tcagaaacaggaacttgaaatggctgttaaacaaatggaacagaagaagttacagcaaggacatcccccttcaggtccag gtggagaactgaaatttcagccatctgtgtcacaattaaatggaaatgtgcaaaatcatccagtgagcagcaatcagcct ttagcgccaggaaatataccagtgcaagaagcagctgctagatcggatcatgcccagtctcatccttaaccagttgtgcc tcggtttatacacattttgtgggaaatgggacataatgtataattatttatataggcgatttaaaaaaaaaagtttttgt atataacaaaatgaaaaaaaaaactcttttcagtagaaaaattaaaagggtcccttgttaatactgattttgacctccaa atggattaaattctcttttataaaacaatttt |
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Protein
| Protein ID | habu1_s7284_g17904.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17904.t1 MXVMDPCRRKQIRWRTTLLQQCVLLLTYVVIILEAVPIDVDKTKVKEEEKDSATVENPDTGLYYDVYLRQVIEVLETDKH FREKLQTADIEEIKSGKLSKELDLVGHKVRTKLDELKRQEVARLRMLIKAKIDAYQDSGVDHQALLKQFGHLNHHNPHTF EVKDLDMLIKTATHDLENYDTERHEEFKKYEMMKEHERREYLKTLDEEKRHQEEAKYEDMKKKHNNHPKVNHPGSKDQLK EVWEEADGLDPNDFDPKTFFKLHDVNADGFLDEQELEALFTRELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDINKD RLVTLEEFMRATEKREFLEPESWETLDQQQVFNEEDLKEFESHIFQKEDELQKQALELQKKREELQQQQDFLQAQKQELE MAVKQMEQKKLQQGHPPSGPGGELKFQPSVSQLNGNVQNHPVSSNQPLAPGNIPVQEAAARSDHAQSHP |
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