Gene
| Gene Model ID | habu1_s7284_g17906 |
|---|---|
| Locus | habu1_scaffold7284 : 1179028 ... 1184075 : + |
| To GenomeBrowser | habu1_scaffold7284:1179028..1184075 |
| Genes list of scaffold | habu1_scaffold7284 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s13 | GO:0000184 GO:0003729 GO:0003735 GO:0005515 GO:0005730 GO:0005925 GO:0006413 GO:0006414 GO:0006415 GO:0006614 GO:0016020 GO:0019083 GO:0022627 GO:0033119 GO:0042254 GO:0070062 GO:0070181 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7284_g17906.t1 | 1 | 1 | Ribosomal_S13_N | 1 | 57 | 6.4e-27 | 93.1 | 3.0e-30 | 1.5e-26 | 92.0 |
| habu1_s7284_g17906.t1 | 1 | 1 | Ribosomal_S15 | 63 | 147 | 5.9e-24 | 83.6 | 2.4e-27 | 1.2e-23 | 82.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7284_g17906.t1 | gi|545222987|ref|XP_001504999.2| | PREDICTED: 40S ribosomal protein S13 [Equus caballus] | 0.0 |
| habu1_s7284_g17906.t1 | gi|4506685|ref|NP_001008.1| | 40S ribosomal protein S13 [Homo sapiens] | 0.0 |
| habu1_s7284_g17906.t1 | gi|560938823|ref|XP_006195201.1| | PREDICTED: 40S ribosomal protein S13 [Camelus ferus] | 0.0 |
| habu1_s7284_g17906.t1 | gi|62860010|ref|NP_001016602.1| | 40S ribosomal protein S13 [Xenopus (Silurana) tropicalis] | 0.0 |
| habu1_s7284_g17906.t1 | gi|556959931|ref|XP_005990576.1| | PREDICTED: 40S ribosomal protein S13 [Latimeria chalumnae] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 700.6 |
| Venom grand-1 | 4064.2 |
| Pit, infrared sensing | 1230.7 |
| Nose | 763.1 |
| Brain-1 | 239.8 |
| Eye | 758.7 |
| fetal fibroblast | 988.0 |
| venom gland-2 | 2902.9 |
| Brain-2 | 194.5 |
| Spleen | 1379.9 |
| Lung | 1044.1 |
| Liver | 1815.2 |
| Kidney | 1620.0 |
| Pancreas | 2411.0 |
| Small intestine | 1796.6 |
| Large intestine | 913.2 |
| Stomach | 1676.1 |
| heart | 742.1 |
| ovary | 295.8 |
| cheek muscle | 1222.3 |
Transcript
| Transcript ID | habu1_s7284_g17906.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17906.t1 cggaaagaaagcttgactgcaaggctgcctttcttgcttctttcttttcggcgccatcatgggtcgcatgcacgcacccg gaaagggtctgtcccagtcggccttgccttacaggagaagcgtgcctacatggctgaaacttacttctgatgatgttaaa gagcagatctacaagttggcaaaaaagggcttgacaccttcccaaattggtgtaatactaagggactcgcatggggttgc ccaagttcgttttgtgactggtaacaaaattctgaggattcttaaatccaagggacttgcccctgatctcccagaagatc tttaccacttaatcaagaaagcagttgctgtccgcaagcatcttgagaggaaccgcaaggataaagatgccaaattccgt cttattttgattgagagcagaattcataggctggctcgttactacaagaccaagagagtactcccacctaattggaagta cgaatcatccacggcttctgctctggttgcgtaaaaattcttattacgaccatgggaatctaaaccatcttgtaatcgtg ttatgcctacttcagagccatgtcattgctttcttatttaaaattggaaggataagttaacatgtttactacatcaataa aagtgtctggattttttttccac |
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Protein
| Protein ID | habu1_s7284_g17906.t1 |
|---|---|
| Definition | - |
>habu1_s7284_g17906.t1 MHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPD LPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA |
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