Gene
| Gene Model ID | habu1_s7349_g17971 |
|---|---|
| Locus | habu1_scaffold7349 : 489669 ... 508301 : + |
| To GenomeBrowser | habu1_scaffold7349:489669..508301 |
| Genes list of scaffold | habu1_scaffold7349 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lon peptidase n-terminal domain and ring finger protein 1-like | GO:0004176 GO:0006508 GO:0006510 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7349_g17971.t1 | 2 | 1 | zf-C3HC4 | 34 | 67 | 6.7e-11 | 41.6 | 1.2e-06 | 0.00062 | 19.3 |
| habu1_s7349_g17971.t1 | 2 | 1 | zf-C3HC4_4 | 34 | 60 | 2.5e-10 | 40.0 | 2.0e-07 | 0.0001 | 22.0 |
| habu1_s7349_g17971.t1 | 1 | 1 | TPR_14 | 98 | 138 | 4.0e-08 | 33.2 | 3.8e-06 | 0.0019 | 18.6 |
| habu1_s7349_g17971.t1 | 2 | 1 | TPR_11 | 104 | 157 | 7.2e-10 | 38.3 | 5.1e-08 | 2.6e-05 | 23.7 |
| habu1_s7349_g17971.t1 | 1 | 1 | TPR_16 | 104 | 159 | 4.5e-09 | 36.7 | 3.0e-09 | 1.5e-06 | 28.6 |
| habu1_s7349_g17971.t1 | 1 | 1 | TPR_19 | 106 | 166 | 3.1e-06 | 27.4 | 1.7e-08 | 8.6e-06 | 26.0 |
| habu1_s7349_g17971.t1 | 2 | 2 | TPR_11 | 136 | 194 | 7.2e-10 | 38.3 | 8.1e-08 | 4.2e-05 | 23.1 |
| habu1_s7349_g17971.t1 | 1 | 1 | zf-C3HC4_3 | 333 | 377 | 4.5e-09 | 35.8 | 9.1e-10 | 4.6e-07 | 29.3 |
| habu1_s7349_g17971.t1 | 1 | 1 | zf-RING_2 | 335 | 374 | 5.2e-10 | 39.0 | 4.7e-10 | 2.4e-07 | 30.4 |
| habu1_s7349_g17971.t1 | 1 | 1 | zf-RING_5 | 335 | 374 | 3.5e-09 | 36.2 | 1.1e-08 | 5.5e-06 | 26.0 |
| habu1_s7349_g17971.t1 | 1 | 1 | zf-C3HC4_2 | 336 | 373 | 2.7e-11 | 43.2 | 6.0e-11 | 3.1e-08 | 33.5 |
| habu1_s7349_g17971.t1 | 2 | 2 | zf-C3HC4 | 336 | 373 | 6.7e-11 | 41.6 | 3.8e-09 | 1.9e-06 | 27.3 |
| habu1_s7349_g17971.t1 | 2 | 2 | zf-C3HC4_4 | 336 | 373 | 2.5e-10 | 40.0 | 1.7e-07 | 8.8e-05 | 22.3 |
| habu1_s7349_g17971.t1 | 1 | 1 | zf-RING_UBOX | 336 | 365 | 1.2e-06 | 28.1 | 3.1e-06 | 0.0016 | 18.1 |
| habu1_s7349_g17971.t1 | 1 | 1 | LON | 426 | 621 | 1.7e-23 | 83.3 | 6.0e-26 | 3.1e-23 | 82.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7349_g17971.t1 | gi|602628498|ref|XP_007421184.1| | PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Python bivittatus] | 0.0 |
| habu1_s7349_g17971.t1 | gi|327273722|ref|XP_003221629.1| | PREDICTED: LON peptidase N-terminal domain and RING finger protein 1 [Anolis carolinensis] | 0.0 |
| habu1_s7349_g17971.t1 | gi|564246655|ref|XP_006262438.1| | PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Alligator mississippiensis] | 0.0 |
| habu1_s7349_g17971.t1 | gi|530618979|ref|XP_005299199.1| | PREDICTED: LON peptidase N-terminal domain and RING finger protein 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s7349_g17971.t1 | gi|363733701|ref|XP_420695.3| | PREDICTED: LOW QUALITY PROTEIN: LON peptidase N-terminal domain and RING finger protein 1 [Gallus gallus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.5 |
| Venom grand-1 | 3.1 |
| Pit, infrared sensing | 4.9 |
| Nose | 4.8 |
| Brain-1 | 2.2 |
| Eye | 7.3 |
| fetal fibroblast | 1.3 |
| venom gland-2 | 3.2 |
| Brain-2 | 2.9 |
| Spleen | 3.4 |
| Lung | 4.3 |
| Liver | 5.9 |
| Kidney | 5.7 |
| Pancreas | 4.7 |
| Small intestine | 5.2 |
| Large intestine | 4.9 |
| Stomach | 4.0 |
| heart | 1.8 |
| ovary | 14.6 |
| cheek muscle | 2.9 |
Transcript
| Transcript ID | habu1_s7349_g17971.t1 |
|---|---|
| Definition | - |
>habu1_s7349_g17971.t1 ctctcccccgccctcccctcaacacccctctccccgtcttcgtgccggcagaagaaaccccggagggaagaaatggcgtc ctcgccggtagcggcgagtgctgggacgcctctcgacctgtctggcgggcggccgtcgcggctcggccgactcccggcgg agctcttccgctgctggggctgcttcagcttcctgggcgagccggtgacggcgccgtgcgggcacacctactgccgccgc tgcctccgggagaggcttcacgcccactgccgccactgcggggacccgctggcgggcacctcggtcgccgtggtcctggc tcacttggcggagaagtggttcccggcggagtgcgccagggctcggacgtggcgccgcctggccgatttgctcaagcagg ggcggccccgcgaggctcgagaagccgccgaccaggcgctccgaaaggatcccagtgatttaatgttaagaatttacaga gctgaatcttatgctagtctccaggaatttaaatctgcactagatgaactgaatgctgttactgctaaaatgccaaattg gcctgaggtatatttcagaagagcaacaatacttaataacgctggttctgtagaagacgccttaaaagtctttcttcatt gcctatcccttgacgaaggatttgttttagcaaaagtagaagcaaaaaagatattgcgtaatttgctgtcacctgaaaac attagtgagaggttgaaagaatctgctttaaatacttcatatgttcgaagtaaacaacttaaacacagctctgcatttga aatggaagagtcttgtgattgtttacagctcaccccagtgtcagtctcagaagtgccacaagttacattagacactattg gaggaagtttgcaacgtgcccagtctgcaaattctcttgattcagtagaaaaagatgccaaagacgatatattaaaaaga gtatcttctgaaccatggctttctggccaagagaaagaaactccaaaagggaatgctaccttttcaatcacttgtggaat agttccagaaaatttggttgatgtaacagactttgaatgctcattgtgtttgaggcttttccttcatcctgtgacaacgc cctgtggccatacattctgcaagaactgtttacaacgctgtttggaccatgctccagagtgtcccctctgtaaagataac ttaaaagagtttttggcacgtaaggaatacagcactacacagttgctagaagaactaatagtgaagtatttacctactga attatccgagagaaaaagaattaatgacgaagaaatagctgaactttcaagtttgaccaagaatgctcctatctttgttt gcactttggcctacccaactgtgccttgccccctccatgtgtttgaaccaagatatagactgatgattcgaagaagtata gaaactggaacaaaacaatttgggatgtgtgtacatgacccccaaaatggatttgcagattatggctgcatgttgtacat tagaaatcttgactacctgccagatggacgatctgttgttgatacaattggattaaagagattccgagttattcgaagag ggatgaaggatggttattgcactgcagacattgaggatttagaagatataaaggttaaagatgaaggtgaaatgaggaaa cttcaggagctccataatattgtttacaaccaggcttgtagctggttccaaagcttaagaaataaatttcatagccaaat acttcagtactttggtccaatgccagagaaggaagaaaacctgcaggaaacagctgatggacctgcgtggtgctggtggc ttctagctgttcttcctgtggatcctaaatatcagctttcagtgctttctatgaggtctttgagggaacgtttgataaaa attcaagctatattgacctatttttccagagatcagtccaaataattaatgacctggaccttaacacaacagtatggctg taacttcagctgatttttttttcttgcagaatttgcacttttagttctgatttgagaactattaggaaaatttttcctat atcagtagttgctcaattagaaggatgccattaatatcgcacatacacaattaatctagcagcaaaatatttatttgcac tatatacaaatggaatgtatcatattattgttaaaaaaaattccactgagtggtggaaagtgcaagatttaaaatttgtc agttcaagtttacagtattaaagacgacttcaaaatcttgcaaa |
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Protein
| Protein ID | habu1_s7349_g17971.t1 |
|---|---|
| Definition | - |
>habu1_s7349_g17971.t1 MASSPVAASAGTPLDLSGGRPSRLGRLPAELFRCWGCFSFLGEPVTAPCGHTYCRRCLRERLHAHCRHCGDPLAGTSVAV VLAHLAEKWFPAECARARTWRRLADLLKQGRPREAREAADQALRKDPSDLMLRIYRAESYASLQEFKSALDELNAVTAKM PNWPEVYFRRATILNNAGSVEDALKVFLHCLSLDEGFVLAKVEAKKILRNLLSPENISERLKESALNTSYVRSKQLKHSS AFEMEESCDCLQLTPVSVSEVPQVTLDTIGGSLQRAQSANSLDSVEKDAKDDILKRVSSEPWLSGQEKETPKGNATFSIT CGIVPENLVDVTDFECSLCLRLFLHPVTTPCGHTFCKNCLQRCLDHAPECPLCKDNLKEFLARKEYSTTQLLEELIVKYL PTELSERKRINDEEIAELSSLTKNAPIFVCTLAYPTVPCPLHVFEPRYRLMIRRSIETGTKQFGMCVHDPQNGFADYGCM LYIRNLDYLPDGRSVVDTIGLKRFRVIRRGMKDGYCTADIEDLEDIKVKDEGEMRKLQELHNIVYNQACSWFQSLRNKFH SQILQYFGPMPEKEENLQETADGPAWCWWLLAVLPVDPKYQLSVLSMRSLRERLIKIQAILTYFSRDQSK |
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