Gene
| Gene Model ID | habu1_s7547_g18147 |
|---|---|
| Locus | habu1_scaffold7547 : 665244 ... 684838 : - |
| To GenomeBrowser | habu1_scaffold7547:665244..684838 |
| Genes list of scaffold | habu1_scaffold7547 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7547_g18147.t1 | 2 | 1 | TNFR_c6 | 29 | 58 | 1.1e-08 | 34.9 | 9.9e-10 | 1.5e-05 | 24.9 |
| habu1_s7547_g18147.t1 | 2 | 2 | TNFR_c6 | 70 | 109 | 1.1e-08 | 34.9 | 3.8e-08 | 0.00056 | 19.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7547_g18147.t1 | gi|602658578|ref|XP_007434991.1| | PREDICTED: tumor necrosis factor receptor superfamily member 27-like [Python bivittatus] | 0.0 |
| habu1_s7547_g18147.t1 | gi|641775291|ref|XP_008171077.1| | PREDICTED: tumor necrosis factor receptor superfamily member 27 [Chrysemys picta bellii] | 0.0 |
| habu1_s7547_g18147.t1 | gi|591370977|ref|XP_007060309.1| | PREDICTED: tumor necrosis factor receptor superfamily member 27 [Chelonia mydas] | 0.0 |
| habu1_s7547_g18147.t1 | gi|558172120|ref|XP_006125304.1| | PREDICTED: tumor necrosis factor receptor superfamily member 27 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s7547_g18147.t1 | gi|564227683|ref|XP_006258304.1| | PREDICTED: tumor necrosis factor receptor superfamily member 19-like [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.4 |
| Venom grand-1 | 1.0 |
| Pit, infrared sensing | 1.5 |
| Nose | 1.5 |
| Brain-1 | 0.6 |
| Eye | 0.9 |
| fetal fibroblast | 11.3 |
| venom gland-2 | 0.5 |
| Brain-2 | 0.5 |
| Spleen | 0.8 |
| Lung | 0.5 |
| Liver | 0.1 |
| Kidney | 0.6 |
| Pancreas | 0.4 |
| Small intestine | 0.7 |
| Large intestine | 0.2 |
| Stomach | 0.4 |
| heart | 2.2 |
| ovary | 0.4 |
| cheek muscle | 2.5 |
Transcript
| Transcript ID | habu1_s7547_g18147.t1 |
|---|---|
| Definition | - |
>habu1_s7547_g18147.t1 gggctctgcgcgggcgacggggctgctggcgctggctgggcgagaagcggagccgaggccgcgcgtcgcctcccggccag atccggctaagtcggcgggcccgggccgcttgtattccagatagtggcgaacggagcagttcaacatggagaagggagct gcgctgcatcttacgctgatcatcatggccgaggctctcgcgtcccagtccatggcaaaccccgtggaatgccgagagag cgaatacctggacaatcacggcaaatgcagcccctgcaaggagtgtggcccgggattcgaactttccaaggagtgtggct atggggaaggaagagaggctgggtgcagcccatgccagcccaggaggttcaaggacagctggggagtgcacggctgcaag tcctgcctctcctgcgcactgattaaccgggcccagaagtccaactgcagcgcaacctccgatgccacctgtggaggctg cttccccggcttctacagtaaaactcagattggtggattccaggaccttgaatgtgtaccctgcacaaagcagaccccat cctccgagcaacagtgcctctctagaattggcttagaagaaagttccacggatcctgtccaagacccggctctggtggtg ctgacgagcagtgccctggtgctcctggtgctggtccttctgacggtcgccattctctactgccaacagttctggaagag ccagtgccagcatgtgtttttgagaaatcagactgtctctggtcagagagggacatttcggacatctgctgggctgactg gtttccacgaactgccgccagatgcttgctccttggacgtcaagaacctcaggtctccctacagatccacagaaggccct gtcagagctcttcagttgatcccaggtgtggacgtttctggatctcacctcccccatccacagcctgatacggattcgtc caaactgatgatagtcacttccaagcaccctccagccaggagccccttggagatgcgtcccctgattggggcttctgggc tccaaagctactctttccctgggggcttttccgagtgcagagaggcccgcagcagaggccctgatggcccagcccagccc tcttcctgcgccagggaatcgcagcattgctggcctcacaccccggtggaatgcactgagctggatctgcaggccttctc tgcctgggccgggaaggggacggccaagaccgaaaccccaggcaagcagacgccgtcacctgaagtgcttccatggtctg cttgtccagcagcccagcctgggctctctctggaagcggcttcggtcccgtgttcctccttccaaaacccgacactagaa agtggagaactcctgcaaagttcctctagcaatgtttctctggagcaaccaccacgttgaatatttacagtttcactctc tcctctcttttgtacacttcagcccttgctattcttcacatggatgttgtggcactggcaacattggtcgagctaaagag actccgccttccatgtggattttgtggcattgtcaggcggtcttctctttaatgccatccagccgcaccccaaactgaag aggttggcccatccccactgattgatgcagaaggctggcactgagccagacatcaagattacaaaagcttattgacttcc aggccagttttggaagaacgtcttcctgatgtcttctcagcgtaaagctctgcagaagattcagcattttgatgcttttt ggctttgtgactaatttattgggacttcagcccataatgtctgactctagaatgttttctactcatccatgagaagactt gtaaaagccgaacggcccagccaacccttgtctcttagagtaaaatcttaaacggagcaaaaagagtttacttatggatc gggggagaaaagaaatccaaggagagacctggactatcatgaaattcaccttctgatcagctttgcaagaaggttgcaga gtcagaggagagcttccgagcactcgtgtccgtctcctggtttctcccattggttaccatttggctccttgaactgcatg gctccatctcacgatggagttactgtacttgaaaacggtggaacttaagtgggtttctttgttcattgttaaaaatgtgg tttattttcagggcatggagggaagttacaatactccagtaagccctgaaaaaataccttacattgctgtggatttgagg tgttctttttcctctggacatttataataatttcaacatggctgttttcaaagtctgccttgatcattctgagcttctga gctcttcagcaaacgtaaaatactgccccttccatctttatttgacactttcaggaaagggttctgaccacgcttgttta tttcccctttgagtagagttgtagcagaaaagaggagtatctccactagtagtgaggcagtccattcagtgttctttcct tgtctttttgcatggtaaaaggtccgtctgaaatgccttccttccttctcagatatggctttgttatctcagggatgtat ctgacaatccatctttatgttgtcaattccagaattcagttccctatataaacaaagatagtcctgacttaataacacta attgggactgacaagtctgctgctcagcaaagcagttgctaaatggaaaatcacatgaccaggactgtgctttcaggctg ggaagagaccaaactactcagtttcacacctttggcttttgtatgcctcctaaacactctcctgccccctccccccagcc attgtcaccacctttggaacactcacaagttcctgctttctgtcttgtgcacattgacagcaaagccattgtgttgcagc agggggggcgggctgggagccatgaggactgcctgtagctaggaaaacaactgaaggaaggcagcaggccaagattgcct tagtgagtcagccttaactaggcttccttggatctggacattatttcctacatggttagtatttaattaactgagcctgg aggcaccctagcagttcaccatcctggcttggtaatgacaactctgtcaagaatataaagatgtatctggggatctcctg ccaatcagaaatggaaaggtgtgtttcttgtataatatgctgaaagcgttttgtgtgatcattgtgggtttaagataggg atcaggacggctttgaattgccaattgggtaattgtattttggacctgactattaagacaataagtactcagccaaatgt gtggattttctttcagctaatatgctgtggctgttgctggttgttgacttgaactgccacagggactccttctgatgaat gcaattttactctgtaacatttcagagagtctctggtacagaccttttttttgtaatagagcttcaatatctcatctcat ttaatagattataatgactttggattagttaacttgctctttcttacatcatcattgccacatttgcctgaaatgcagac acaattggtgaattggttgactgggttctcatagattatatgaaactgcagttggtaactaaaaattcaggcttctctac agccattaagcagatatgcagcagattgtcaaaattcagctgtcattgtcattgcatttgtgtgatcaagtgtcatggga atctttgagtaaacacaaatataagcctatcattt |
|
Protein
| Protein ID | habu1_s7547_g18147.t1 |
|---|---|
| Definition | - |
>habu1_s7547_g18147.t1 MEKGAALHLTLIIMAEALASQSMANPVECRESEYLDNHGKCSPCKECGPGFELSKECGYGEGREAGCSPCQPRRFKDSWG VHGCKSCLSCALINRAQKSNCSATSDATCGGCFPGFYSKTQIGGFQDLECVPCTKQTPSSEQQCLSRIGLEESSTDPVQD PALVVLTSSALVLLVLVLLTVAILYCQQFWKSQCQHVFLRNQTVSGQRGTFRTSAGLTGFHELPPDACSLDVKNLRSPYR STEGPVRALQLIPGVDVSGSHLPHPQPDTDSSKLMIVTSKHPPARSPLEMRPLIGASGLQSYSFPGGFSECREARSRGPD GPAQPSSCARESQHCWPHTPVECTELDLQAFSAWAGKGTAKTETPGKQTPSPEVLPWSACPAAQPGLSLEAASVPCSSFQ NPTLESGELLQSSSSNVSLEQPPR |
|