Gene
| Gene Model ID | habu1_s7897_g18370 |
|---|---|
| Locus | habu1_scaffold7897 : 1178784 ... 1220533 : + |
| To GenomeBrowser | habu1_scaffold7897:1178784..1220533 |
| Genes list of scaffold | habu1_scaffold7897 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein transport protein sec24a isoform x2 | GO:0006886 GO:0006888 GO:0008270 GO:0030127 GO:0045714 GO:0050714 GO:2000189 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7897_g18370.t1 | 1 | 1 | zf-Sec23_Sec24 | 271 | 308 | 2.3e-16 | 59.0 | 1.8e-19 | 4.4e-16 | 58.1 |
| habu1_s7897_g18370.t1 | 1 | 1 | Sec23_trunk | 344 | 581 | 0.0 | 278.5 | 0.0 | 0.0 | 277.6 |
| habu1_s7897_g18370.t1 | 1 | 1 | Sec23_BS | 587 | 671 | 2.5e-21 | 76.0 | 2.9e-24 | 7.1e-21 | 74.5 |
| habu1_s7897_g18370.t1 | 1 | 1 | Sec23_helical | 684 | 783 | 7.7e-25 | 86.3 | 6.7e-28 | 1.7e-24 | 85.2 |
| habu1_s7897_g18370.t1 | 1 | 1 | Gelsolin | 809 | 881 | 9.0e-12 | 44.5 | 7.6e-15 | 1.9e-11 | 43.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7897_g18370.t1 | gi|602630046|ref|XP_007421942.1| | PREDICTED: protein transport protein Sec24A isoform X2 [Python bivittatus] | 0.0 |
| habu1_s7897_g18370.t1 | gi|602630044|ref|XP_007421941.1| | PREDICTED: protein transport protein Sec24A isoform X1 [Python bivittatus] | 0.0 |
| habu1_s7897_g18370.t1 | gi|602630048|ref|XP_007421943.1| | PREDICTED: protein transport protein Sec24A isoform X3 [Python bivittatus] | 0.0 |
| habu1_s7897_g18370.t1 | gi|637326071|ref|XP_008113718.1| | PREDICTED: protein transport protein Sec24A isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s7897_g18370.t1 | gi|637326067|ref|XP_008113717.1| | PREDICTED: protein transport protein Sec24A isoform X1 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.3 |
| Venom grand-1 | 6.9 |
| Pit, infrared sensing | 5.8 |
| Nose | 7.0 |
| Brain-1 | 4.1 |
| Eye | 4.5 |
| fetal fibroblast | 15.1 |
| venom gland-2 | 14.5 |
| Brain-2 | 3.6 |
| Spleen | 7.2 |
| Lung | 4.6 |
| Liver | 15.1 |
| Kidney | 10.5 |
| Pancreas | 8.8 |
| Small intestine | 12.4 |
| Large intestine | 5.6 |
| Stomach | 6.4 |
| heart | 4.5 |
| ovary | 12.9 |
| cheek muscle | 11.0 |
Transcript
| Transcript ID | habu1_s7897_g18370.t1 |
|---|---|
| Definition | - |
>habu1_s7897_g18370.t1 gccaagcaaggctgtccgccatttttttccccttttccagcgggtgccttacctcccttgagctgggccagctggtggtc ggcctgctccgtctctgccacttgccagctacgcctcggccagcgcagggggcggaaccacgcatgcacagcgctcccgg gcagggaaagtcctcgacttacgaccggttgggtagtcctcgacttacgaccgggaatacaaatttgcccacaaactatc attatgtttcttctgctggaggtcctccagttcaaaacacctatacaaggcaagttccacctcctttaggaccttctgca gttggaagtccagtttatacacatccctctgctcccccattagctcctcccccagtaagcactgcatcccaggctctaca gaactcagcaagtatgcaagaaggtgatactacatgctctgctaatgatggactatcagtccagaataattacgatgcaa tagaaggaggtggtttcctggcaactccacatgctcctgctcctcaaaatattaaagtgaacaaacatgttgggactgct tatcccagcttgcccccaggctaccaaaatgcttctccacctggaggaccaagaatgcagtatccaggaggacctcaaca attccctcagtctggcttgggagtaaataccttaactgcatctatgggtggactaagtcttcagcctgaaggattaagac ctatcaaccttcttcaagaaagaaatattcttcctgcaacccccttgcaagcacccattccccatgtgcatgaagatatt cagaagctcaactgcaatcccgagttgttccggtgtaccttgactaacattcctcagactcaggccttactgaataaagc caaacttcccctggggcttctgcttcaccctttcaaagatttatcgcaattgcctgtagtaacttctagtacaattgtga gatgtcgcagctgtagaacgtatatcaatccttttgtcagcttccttgatcaaaggagatggaaatgcaacttgtgccac agagtgaatgatgttcctgaagagtttatgtataatcctgtgacaagagtttatggagaacctcataaaagacctgaagt tcaaaatgccactattgagtttatggctccttctgaatacatgctacgtccacctcagcctcctgtgtacctctttgtat ttgacgtgtcacataatgcaatagaaacaggatacttagatactgtctgcaagactttgttggacaatctagatctactc ccagggaacactagaacaaaaataggcttcataacatttgacagcacaatccatttctatagcctccaggaaggtctctc acagcctcaaatgttaatcatttcagatattgaagatgtgtttatacccatgccggaaaacttattagtaaatttaaacg aaagcaaagagctgattcaagatttattgagaactttgcctcagatgtttactaaatctttggaaacccaaagtgctttg ggacctgcgctacaggctgcctttaaacttatgtcacctactgggggtcggattactgtcttccaaactcagcttccatc tttaggagcaggtgtcctcaaaccacgggaagagcctaaccaaaaagcatccacaaaggatgttcctctgacaccatcta ctgacttctataaaaaattggccttggattgctcaggacagcaggttgcagttgacttgtttcttcttagtgggcagtac tctgacttggcttcattaggatgtatatcaaggtattctgccggtagtgtccattattatcaagcttaccatcatcaaca caatcctcttttggtggaaaaattacagaaagaactaaagcgatatttaactaggaagattggctttgaagctgtcatga ggataagatgtaccaaaggcctttcaattcacaccttccatggcaacttctttgtacggtcaactgatctattgtctctg ccaaacgtgaatcctgatgcaggatatgctgtccaaatgtccgtagaggagagcttgacagatatgcaagtggtctgttt tcagtcagccctcctatatacatctagtaaaggtgaaagaagaattcgtgtccacacactgtgtttaccagttgtaagcc aattgagtgatgtttatttaggagctgatgtacaagctattacaggccttttagccaatatggctgttgaccggtcagtt tctgcaagtttgaatgatgctcgagatgcattggtgaatgctgtaatagattctctttctgcataccgctcatctgttct aaccattcagcaaccaggtcttatggctcctgcatcattgcgtctgttcccattgtttatcctggctctcttaaaacaga aagcattccaaagtaaaacaaatacccgtttagatgaacgcatctttacaatgtgtcaagtgaaaagccagccattagtg tacctcatgcttattatgcatcccaatctgtatagaattgacaatctcacagatgagggagccctcaacattggtgacag aacaatacctcagccacccattcttcagctgtctgtagagaagctaaaccgggatggtgcttttcttatggatgctggct ctgtcatgttcttatgggttggcaagaattgcggaccgaactttataagccaagtacttggagccccaaactatgcatca ataccacacaatatgacgcatcttccagaattgaacacagctgaatcttctagagtgcatgcttttattttctggctaag ggagcaaaggcctttctttcctatattatatattctaagggatgagagtccgtggaaaccaagtttcctacaaaatatga tagaagacagaacagaatctgcattatcatattatgaatttcttttgcatattcagcaaaaaatgaataaatgagctctt ttcttaaatggttcatctgctcaaaggaatgtacctccgtgcagaactcttattcctgtaacgctcctataagttgttgg cctggtgcagttgatgaaaatctcactgtgattcccccctcttctcccccccaaaaaggaaaaagaaaagcaaataaagg accgtggaatcattaagtacactattgtgtagttgtacattaaaactttaaaataaatttgaatatgttggacaccttta atttactgcaaaaatgtttcacagtaagtaattgtggtatacgttaaaaggcaatattggagaaatatttataaacttaa cttttttacctgtcacttttatttttctgctttgtgttttgctgctagaattaaaaactccaagactcgagtttccagga aactatattgtcttgattatacaatacattattcgttaaaagttgcctttttaaaaggaacagtgaaaagtacattgtga acaaaatacttgcagttttaatgagctaagtttccatttcttttaaacattgattatgataagaacaaaagtaaacttga agaagtctatttgggtttaagatgaatatcaaataattcatttgaatacctttaggatgtatcagtattctaggtcttga aagtttaatgagattacattatattcagtaagaattaaaatttaaaaagatctgatgcagctgaaaaaaatagtgaacaa taattgatcctagtcttggctgttagcatgatgtgtttggtcttaattcattgaaagtaaataggggaacagacagtaaa ccaaaaaccattattttcatattgttttattaatttttcagtcacctttttgtaatgggctgaggttttgataaaatcct tactggttaaataatactttggaggtgtatttaatagcttgttgagatccagaggagcatcagatttagtaataataatt ttgctattcaagcattttaaggctttaatgggaaaaatataggcaggaaccctgctcagttcagaatgttcgaattctgg acagttataaaagagaaatcttagtattatggtttcctggaaattgctataatttaagtaattagattagataaccttta ttgtcattaataatataagcgtattgacatttgtaaaac |
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Protein
| Protein ID | habu1_s7897_g18370.t1 |
|---|---|
| Definition | - |
>habu1_s7897_g18370.t1 MHSAPGQGKSSTYDRLGSPRLTTGNTNLPTNYHYVSSAGGPPVQNTYTRQVPPPLGPSAVGSPVYTHPSAPPLAPPPVST ASQALQNSASMQEGDTTCSANDGLSVQNNYDAIEGGGFLATPHAPAPQNIKVNKHVGTAYPSLPPGYQNASPPGGPRMQY PGGPQQFPQSGLGVNTLTASMGGLSLQPEGLRPINLLQERNILPATPLQAPIPHVHEDIQKLNCNPELFRCTLTNIPQTQ ALLNKAKLPLGLLLHPFKDLSQLPVVTSSTIVRCRSCRTYINPFVSFLDQRRWKCNLCHRVNDVPEEFMYNPVTRVYGEP HKRPEVQNATIEFMAPSEYMLRPPQPPVYLFVFDVSHNAIETGYLDTVCKTLLDNLDLLPGNTRTKIGFITFDSTIHFYS LQEGLSQPQMLIISDIEDVFIPMPENLLVNLNESKELIQDLLRTLPQMFTKSLETQSALGPALQAAFKLMSPTGGRITVF QTQLPSLGAGVLKPREEPNQKASTKDVPLTPSTDFYKKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVHYYQ AYHHQHNPLLVEKLQKELKRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTD MQVVCFQSALLYTSSKGERRIRVHTLCLPVVSQLSDVYLGADVQAITGLLANMAVDRSVSASLNDARDALVNAVIDSLSA YRSSVLTIQQPGLMAPASLRLFPLFILALLKQKAFQSKTNTRLDERIFTMCQVKSQPLVYLMLIMHPNLYRIDNLTDEGA LNIGDRTIPQPPILQLSVEKLNRDGAFLMDAGSVMFLWVGKNCGPNFISQVLGAPNYASIPHNMTHLPELNTAESSRVHA FIFWLREQRPFFPILYILRDESPWKPSFLQNMIEDRTESALSYYEFLLHIQQKMNK |
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